BS28557.complete Sequence
1304 bp assembled on 2012-04-06
GenBank Submission: KX803410
> BS28557.complete
GAAGTTATCAGTCGACATGGCTGATTTACTAAAGGCTCTGAATATTACGG
GCAACCTGCTGGCAGGCCTCGAAGATGCCGGCAATCTAACGATTGCAACT
GCCACAACCACAACTTTAAGTGAAGGCCTTAATGGCAATGCAACGACCTT
GGATGCCGCAGCATCCACCAGTAGTGGCGAAAAACTCGATCTTGGCGGCT
TCGATCTGCCCGGCAACTACTCCATACTCATTAACAAACTGGAGCAGCTG
GCCTTGGGCTTGGATTCGGCCTTGGGAAATTTCACCATCGATCGCCAGGA
GGTCGAGATCAATTTGAGCGGCGCAGCCACGGCCAACGACGTTGCCGATG
TAGCCGACGATCTCTTTGATGTCCTGCCAGCTGCTCGGGCACCTCCGCCG
CATATAGCACACGGATCAAGGATATATACCGGCGACGATGGCCAGGACTT
TGCCCACGTGGTCAGCGATATCTGGATTGGAGTCATCCTTACACTGCTCA
TCGTCTTTGTGATATTCTTCATATGCGCTTGCTTCGTTTACCACAAATTC
CAGCAGTGGAAGAACTCATACCGTGCCAATCACAGTGATCCCACGATCGA
GATCTGCCGCCGCTGTCCGCCGGACTACGAGGCGGAGTCCCTGCCCTCGT
ACACGATTGTTTCCGGACTGCCGACGTACGATGATGCACTGGAGGAGTTC
CGCAAGGCGGGCATTATCCTCACACCCGCCATGGTGCCCATCATCAAGAT
CTTCGAGTGCAACGAGACCGGCAAGGAGCAGGCGGTGGGCTACAGCCTGG
TGGAGACGAACATAGCGAGTGCGGATGCTGCCGCGGATAATGTGTCGCTG
GCCTCGACCACCTGCAATTGTGGCAACTCCTCGCCCACCTCATCGCTGCC
CAGTTACAGTGCCGCCACGGCGGCTGTGATGGCAGCGGCGGCTGCTGCTC
CTCCCCAGGTGATCGAACTATCACCGGAACACCTGGCCTCGTTGTCCCAG
AAGCGTCTCTCCCTGCAGATCTCATTCAATAACTCGGTGCGCCGGCAGTC
GCCGCTCAGGAATCATCTGCTGAGATCCCGAGCGGTGGGAAATACCGCCG
GTGTTGGTCCATCGGAGGCAGCCGGTCCTGCCATTCACGGGTCGGGAGCT
CACGGAGTCCATGGCGGCGGAGGTGCAACCATTCTGCCCGTTCTGCATCG
CTCCTCCTCTACAATTTCACTGTCCAACGAACGCCAGTTGCTGGATCAAC
GCCTCAGGCATTTGCATCATCGCGGTTCCCTCTACTGAAAGCTTTCTAGA
CCAT
BS28557.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:22:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| comm3-RE | 1272 | CG42334-PE | 1..1272 | 17..1288 | 6360 | 100 | Plus |
| comm3-RD | 1272 | CG42334-PD | 1..1272 | 17..1288 | 6360 | 100 | Plus |
| comm3-RC | 1137 | CG42334-PC | 419..1137 | 570..1288 | 3595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:22:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| comm3-RE | 2055 | CG42334-RE | 664..1935 | 17..1288 | 6360 | 100 | Plus |
| comm3-RD | 1522 | CG42334-RD | 131..1402 | 17..1288 | 6360 | 100 | Plus |
| comm3-RC | 1402 | CG42334-RC | 564..1282 | 570..1288 | 3595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:22:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15613304..15614022 | 1288..570 | 3595 | 100 | Minus |
| 3L | 28110227 | 3L | 15631898..15632450 | 569..17 | 2765 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:22:50 has no hits.
BS28557.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 13:46:49 Download gff for
BS28557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm3-RD | 131..1401 | 17..1287 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:35 Download gff for
BS28557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm3-RD | 131..1401 | 17..1287 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:10 Download gff for
BS28557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm3-RD | 131..1401 | 17..1287 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:10 Download gff for
BS28557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15613305..15614022 | 570..1287 | 100 | <- | Minus |
| 3L | 15631898..15632450 | 17..569 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:35 Download gff for
BS28557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15606405..15607122 | 570..1287 | 100 | <- | Minus |
| arm_3L | 15624998..15625550 | 17..569 | 100 | | Minus |
BS28557.pep Sequence
Translation from 16 to 1287
> BS28557.pep
MADLLKALNITGNLLAGLEDAGNLTIATATTTTLSEGLNGNATTLDAAAS
TSSGEKLDLGGFDLPGNYSILINKLEQLALGLDSALGNFTIDRQEVEINL
SGAATANDVADVADDLFDVLPAARAPPPHIAHGSRIYTGDDGQDFAHVVS
DIWIGVILTLLIVFVIFFICACFVYHKFQQWKNSYRANHSDPTIEICRRC
PPDYEAESLPSYTIVSGLPTYDDALEEFRKAGIILTPAMVPIIKIFECNE
TGKEQAVGYSLVETNIASADAAADNVSLASTTCNCGNSSPTSSLPSYSAA
TAAVMAAAAAAPPQVIELSPEHLASLSQKRLSLQISFNNSVRRQSPLRNH
LLRSRAVGNTAGVGPSEAAGPAIHGSGAHGVHGGGGATILPVLHRSSSTI
SLSNERQLLDQRLRHLHHRGSLY*
BS28557.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| comm3-PE | 423 | CG42334-PE | 1..423 | 1..423 | 2158 | 100 | Plus |
| comm3-PD | 423 | CG42334-PD | 1..423 | 1..423 | 2158 | 100 | Plus |
| comm3-PC | 378 | CG42334-PC | 141..378 | 186..423 | 1213 | 100 | Plus |
| comm2-PA | 343 | CG7554-PA | 113..286 | 144..310 | 222 | 30.2 | Plus |
