BS28558.complete Sequence
3104 bp assembled on 2012-04-06
GenBank Submission: KX801066
> BS28558.complete
GAAGTTATCAGTCGACATGTGGCCGCAAACGCTGGAAATGTCGCGGGACG
AGTGCCGAGGCATGCTGCGTCGACTGGAACTCGAGTCCTATTCACATGTG
GTGAGCGTTTTTCGCGCCCAAGGAGCCCTCAGTGAAACGAAGGCGAAACT
GCTGGAGGAGCTGCGCCAGCAGTTCCACATTAACCAGGAACGCCACAGGG
CGGAAGTGCGGAGGGCGGCCAACGACGAGCAGCTCTGCACCATTGCGGAA
AACGTTTGTGGGCCCAACACCTGGCAGGAATGGTCACGCGAGGGACGACG
CCTCTATCCTCTTCTTCCCAGGATTAGTCCACAAACTGCGCTGAGCATCG
TTGCCAATGACCTGGCGGCCAAAGCCTGCGAGGAAAACGCCAAATTGGCT
GCTCCGGCCGAAACGGCGGTCCACTTTGGAGAAGCCCTCGTGGAGCAGGC
CTCGCTGATGAGCCTGAAATATCCGCGTGGTGCCAGGATCCAGGACACCG
CCATGGTGATCATGGCGGAGCCGTTCAAAGTTCCCGATCTACCCAATGAG
GTGAAGAAAATGACACAGAAGCGCAAGGAGAACGATAGCGGAATCGACGG
CAAGCCGAACAAGAAGCGGCATATGCAGCAACCACATCCGCAGCAGCCGC
ATCTGCAGGCTTCGCAGCAGCAGCAGCAGTCACAGCAGCTGAATCCGAAC
TCCTCGAATCCCGGCATGGAGGAGGCAGATCCCGTGCCGCCAGAGAAACG
GATGACTGCTCGGACGCTACAGCAGCGCTACTTCTACCAGCAGCAGATGA
AGCACAAGCAGCGACTGGCCAGCAAACGGAATCTTGCCAACAGACTGGGC
TCACCCTCCGCGCAATCGGGCAATCCCTTGGGCGGCAGGAATATGCCCAG
CTCCGGTGGAGACACTTCGACAGCTAAGCGAAGTGCCGCACCTGCCAAGA
GCGGCAGACGAGCGCAGAAGCAACTGCAGCAGCAACAGAAGTTGCAGCAA
CACCAGCAACAGAAAGTATTAATGCAGTCGCAGGAGACGGTGCCCAATCA
CATGGTGGTACAGCCGCACGTGGAGTATGTGTTGGATGAGGCGCTCAAAA
CGCTGGCGGCATCCAATCCTCCCACGCCCACGTCCACAGTCGCTCCTCCA
TACACAATCCTAAACGAGCCGAGGCCACTGGTCACGCTGAAGCCTCTGAA
GACCATTAAGCCGATGATCTATGGGCCGCAAAGTGGTATGCCCTCTGCCG
AAATTGGATCCCCCACAACGCCAGGCTCTCGCGGATTTGCCAACTCTCCC
ATAGTGTTTAAGGAGAAGCTGCAGGCGTCACCCGTGCAGGTGGCCACACA
GGGTCAAGGTTCGCCCACCAAGAAGTTTGTGGCTGAGGAACGACATGCGG
ATGCGATGCCCTCCGCGGCCACTACGCCCACTCCCATTTCCACCGCGAAT
CTTCCATTGGCGCCGCAGATAATCAGTGTTCAGAAGATCCCAGCTCCGTC
GATGGGCGGCAAGCTGAGAGCAGCCGTGGCTTCGCCCACCAGTTCCACAA
ACTCCACGCTCCTGCCACCGGGCGCCAAGACAACGCCCAAGAAGTTCAAC
ATCCTTGAGGGCGATGCCAAGCCCAAGACCTTGCCCAGTTCGGCGGTTCG
CCTGCTGCCGTACACGGAACCCATAGGCGGTCCTTTGTCGCCGCTCAAGG
ATTCCAGGGTCACTCCCTTAAGCAGCGCCTCCACCGTCAACATTATCAAG
AATATACCAGCTAGTAGTTTAAACAACACATTGATCACACCGCTTCCCTC
AGCCGGCACCACCATGCCGGCGAATCTCTTCAGAGCGAAGGTAACGCCGT
CAATCAAAGGAGCCAGCGGTGCTGCAGGCGGCGCAACCGTTATTGGTGCC
GCCGGAGCAACAGGAATCGGTGGAGCAGGGGCTGGGCCTCAGATACTAGG
GAATATCAAGCTAACCAGCAGTTCGGGCGGAGCAGCCACTATTAAACAGG
TGCCCAGCAGTGCGCTGCGGAACATAAAGATTTGCTCACCCAACGGGAAG
CTATTCCTACAGCCGGGTAAACTGCCAGCCGGAAGCATTATTCACAAGTT
CAATAACGCAAGCAGCACTGCGGTGTCTGCGGCGGGAGGAGTTGTGACCA
CCACCACCACCACTGTATCGCCCACAAAGCAGCCGGCGAGGGAGCAGAGG
ATCAGCATACAGAAGATACTCCAGCCGGCGACAGGAAGCGCCAGTAGCGG
AAGCAGCAGTCCCACCACCACCACGACGACCATATCCGGCTTGACTTCCA
GTGCCAAGCAGCCAGGTTTGGGCAACAAGCCGACCACGCTGACCTTCGCC
ACTGCGGGCGGTGGTAAGAACAATCTGGTCTTTCTGCCAGCGAGTGCGGC
GAGTGGCATGCGGGCACTCACCCTGGCCACAAAGCCCAAGTCCAATGTGC
TGGTCATAGGGGCGAGCACCTCTCCAGCTAGTGCCGCGTCATCTCCCAAT
CCCTCAGGCGGCACCAAGCCCAAAGCCAACCAACTCATTACGGAGGACAC
GCCCATCGATATTATTAACATGCCCATCATTGTGGCAGACAACGGCACCG
CTGCGGAGCTCAATCAGGCGTCGGTGAAGAACTCGCCCCTGGTCGTGTTC
AATGCCACCGACTGGGAGATGGAGCTGGATCAGGCAGCCACCAAGTCTGC
CAGCACGACCTCGAAACAAGCTCTGGACGATGTGATCATCGAGGAGGACG
AAGATGCCGAGGAGGAGGCAAGGGAGAGTAGTGAGCAGCCATCTACCATG
GACCTGAACAATAGCATAATTGAGCTGCACCCGGAGGATGACAGTGCCAT
CGAGTACGTCGACATGGACCTGGAGCAGCCCGTCGAGATTGAGAGCACCA
GCAACATATCGCCAGAGACGGCCACCACCACGCTAAAGGCAGCCATCGTC
TCCACATCCCCCCAGCAGCAGCAGCAGCAGCCGCAGAAGAAGCATCCCCC
ACTGGAGCATCCACTGAGCGCAGGAGCGGCTGCAGGAACAGGAAGCAGCA
CGGGAGCAGCTGTCCAATCAGCAATTAAGTTACCCTAAAAGCTTTCTAGA
CCAT
BS28558.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:22:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15356-RA | 3072 | CG15356-PA | 1..3072 | 17..3088 | 15345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:22:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15356-RA | 4294 | CG15356-RA | 137..3220 | 10..3093 | 15360 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:22:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1976910..1979203 | 2816..523 | 11470 | 100 | Minus |
| 2L | 23513712 | 2L | 1976537..1976813 | 3093..2817 | 1370 | 99.6 | Minus |
| 2L | 23513712 | 2L | 1979910..1980180 | 523..253 | 1355 | 100 | Minus |
| 2L | 23513712 | 2L | 1980253..1980428 | 252..77 | 865 | 99.4 | Minus |
| 2L | 23513712 | 2L | 1980552..1980619 | 77..10 | 310 | 97.1 | Minus |
Blast to na_te.dros performed 2014-11-28 04:22:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2405..2646 | 565..815 | 197 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6858 | 918..1035 | 162 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6870 | 921..1011 | 161 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2396 | 927..1015 | 158 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1131 | 938..1014 | 156 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6849 | 918..1014 | 154 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6511..6571 | 950..1009 | 149 | 73.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1153 | 946..1015 | 147 | 70.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1050..1162 | 908..1012 | 146 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6426..6892 | 528..1015 | 143 | 54.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6816 | 935..1014 | 143 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6814 | 946..1036 | 141 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6792 | 964..1035 | 137 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2362 | 956..1014 | 133 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6759 | 977..1014 | 127 | 81.6 | Plus |
| gypsy | 7469 | gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). | 4742..4830 | 1963..2058 | 121 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1577 | 965..1015 | 120 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6878..6943 | 946..1012 | 116 | 65.7 | Plus |
BS28558.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 13:46:47 Download gff for
BS28558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15356-RA | 144..3213 | 17..3086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:28 Download gff for
BS28558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15356-RA | 144..3213 | 17..3086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:56 Download gff for
BS28558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15356-RA | 144..3213 | 17..3086 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:56 Download gff for
BS28558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1976544..1976813 | 2817..3086 | 100 | <- | Minus |
| 2L | 1976910..1979202 | 524..2816 | 100 | <- | Minus |
| 2L | 1979910..1980180 | 253..523 | 100 | <- | Minus |
| 2L | 1980253..1980427 | 78..252 | 99 | <- | Minus |
| 2L | 1980552..1980612 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:28 Download gff for
BS28558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1976544..1976813 | 2817..3086 | 100 | <- | Minus |
| arm_2L | 1976910..1979202 | 524..2816 | 100 | <- | Minus |
| arm_2L | 1979910..1980180 | 253..523 | 100 | <- | Minus |
| arm_2L | 1980253..1980427 | 78..252 | 99 | <- | Minus |
| arm_2L | 1980552..1980612 | 17..77 | 100 | | Minus |
BS28558.pep Sequence
Translation from 16 to 3087
> BS28558.pep
MWPQTLEMSRDECRGMLRRLELESYSHVVSVFRAQGALSETKAKLLEELR
QQFHINQERHRAEVRRAANDEQLCTIAENVCGPNTWQEWSREGRRLYPLL
PRISPQTALSIVANDLAAKACEENAKLAAPAETAVHFGEALVEQASLMSL
KYPRGARIQDTAMVIMAEPFKVPDLPNEVKKMTQKRKENDSGIDGKPNKK
RHMQQPHPQQPHLQASQQQQQSQQLNPNSSNPGMEEADPVPPEKRMTART
LQQRYFYQQQMKHKQRLASKRNLANRLGSPSAQSGNPLGGRNMPSSGGDT
STAKRSAAPAKSGRRAQKQLQQQQKLQQHQQQKVLMQSQETVPNHMVVQP
HVEYVLDEALKTLAASNPPTPTSTVAPPYTILNEPRPLVTLKPLKTIKPM
IYGPQSGMPSAEIGSPTTPGSRGFANSPIVFKEKLQASPVQVATQGQGSP
TKKFVAEERHADAMPSAATTPTPISTANLPLAPQIISVQKIPAPSMGGKL
RAAVASPTSSTNSTLLPPGAKTTPKKFNILEGDAKPKTLPSSAVRLLPYT
EPIGGPLSPLKDSRVTPLSSASTVNIIKNIPASSLNNTLITPLPSAGTTM
PANLFRAKVTPSIKGASGAAGGATVIGAAGATGIGGAGAGPQILGNIKLT
SSSGGAATIKQVPSSALRNIKICSPNGKLFLQPGKLPAGSIIHKFNNASS
TAVSAAGGVVTTTTTTVSPTKQPAREQRISIQKILQPATGSASSGSSSPT
TTTTTISGLTSSAKQPGLGNKPTTLTFATAGGGKNNLVFLPASAASGMRA
LTLATKPKSNVLVIGASTSPASAASSPNPSGGTKPKANQLITEDTPIDII
NMPIIVADNGTAAELNQASVKNSPLVVFNATDWEMELDQAATKSASTTSK
QALDDVIIEEDEDAEEEARESSEQPSTMDLNNSIIELHPEDDSAIEYVDM
DLEQPVEIESTSNISPETATTTLKAAIVSTSPQQQQQQPQKKHPPLEHPL
SAGAAAGTGSSTGAAVQSAIKLP*
BS28558.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15356-PA | 1023 | CG15356-PA | 1..1023 | 1..1023 | 5172 | 100 | Plus |
| Su(z)2-PB | 1368 | CG3905-PB | 597..1349 | 309..1023 | 194 | 20 | Plus |
| Su(z)2-PA | 1368 | CG3905-PA | 597..1349 | 309..1023 | 194 | 20 | Plus |
| Su(z)2-PC | 1396 | CG3905-PC | 597..1349 | 309..1023 | 194 | 20 | Plus |
| DLP-PB | 1659 | CG9537-PB | 527..993 | 172..588 | 175 | 22 | Plus |
