BS28560.complete Sequence
743 bp assembled on 2012-03-26
GenBank Submission: KX805306
> BS28560.complete
GAAGTTATCAGTCGACATGTTTATTGTGGCTGTAACTGGCGGTATCGCCA
CGGGAAAAAGTACCATCAGCAAAGTGTTCGAACGCCAGGGTATTCCAGTC
ATCGACGCCGACAAAATCGCCAGGGAGATTGTGGAACCAGGTCAGCCGTG
CTGGCGGCAGATTCGGGAAGTCTTCGGAGATGAGGTCCTCCTGCCCAGCA
AGGAGATCAACCGCGCTGTTCTGGGTAAGATGATCTTCGAGGACAAGGAG
CTGCGCGGAAAGCTGAACAAGATCACCCATCCGACCATCCATCGCAAGAT
CTTTTGGCAAGTGTGCAAGCTGCTGGTCACGGGGCACGCGTGGATCGTCC
TCGACCTGCCACTGCTCTTTGAGACCGGCGTGCTGATGGACTTTATACAC
AAGATCGTCTGTGTAACCTGCGACTCGGACAAGCAGCTGGAGCGATTAAT
AGCCCGCAATGAGCTCTCGGAATCGGAAGCCCGGCATCGCGTCGATTCAC
AAATGCCGCTGGACAAGAAGTGCGAGAAGTCTCACTTCGTCATTGACAAT
AACGGGAGCGTGGAGGAGGCGGAGAGCTCGGCCATGAGCATTTACAACCT
GATGCGCGACTCCAAGCAGCACTGGCTGAACCGCATCAGCTTCCTGGGGC
TGTTCCTAATCGTGGGCTTCACAATATATATGCTGCTGAAGGTGTTCAAC
CGGCTGCCCGAGTCCTGGCAGATGTAGAAGCTTTCTAGACCAT
BS28560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpck-RA | 711 | CG1939-PA | 1..711 | 17..727 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpck-RA | 914 | CG1939-RA | 96..806 | 17..727 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:09:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7082836..7083143 | 420..727 | 1540 | 100 | Plus |
| 3R | 32079331 | 3R | 7082474..7082765 | 129..420 | 1460 | 100 | Plus |
| 3R | 32079331 | 3R | 7082277..7082388 | 17..128 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:09:06 has no hits.
BS28560.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:21 Download gff for
BS28560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpck-RA | 95..799 | 23..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:18 Download gff for
BS28560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpck-RA | 102..806 | 23..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:57 Download gff for
BS28560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpck-RA | 102..806 | 23..727 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:57 Download gff for
BS28560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7082283..7082388 | 23..128 | 100 | -> | Plus |
| 3R | 7082474..7082765 | 129..420 | 100 | -> | Plus |
| 3R | 7082837..7083143 | 421..727 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:18 Download gff for
BS28560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2908005..2908110 | 23..128 | 100 | -> | Plus |
| arm_3R | 2908196..2908487 | 129..420 | 100 | -> | Plus |
| arm_3R | 2908559..2908865 | 421..727 | 100 | | Plus |
BS28560.pep Sequence
Translation from 16 to 726
> BS28560.pep
MFIVAVTGGIATGKSTISKVFERQGIPVIDADKIAREIVEPGQPCWRQIR
EVFGDEVLLPSKEINRAVLGKMIFEDKELRGKLNKITHPTIHRKIFWQVC
KLLVTGHAWIVLDLPLLFETGVLMDFIHKIVCVTCDSDKQLERLIARNEL
SESEARHRVDSQMPLDKKCEKSHFVIDNNGSVEEAESSAMSIYNLMRDSK
QHWLNRISFLGLFLIVGFTIYMLLKVFNRLPESWQM*
BS28560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpck-PA | 236 | CG1939-PA | 1..236 | 1..236 | 1226 | 100 | Plus |
| Ppat-Dpck-PA | 518 | CG10575-PA | 312..507 | 2..196 | 243 | 29.9 | Plus |
