Clone BS28562 Report

Search the DGRC for BS28562

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG43098-RA
Protein status:BS28562.pep: full length peptide match
Sequenced Size:515

Clone Sequence Records

BS28562.complete Sequence

515 bp assembled on 2012-03-26

GenBank Submission: KX800175

> BS28562.complete
GAAGTTATCAGTCGACATGAGCGCCAGAACTAGGCGCTACGAACGTGACG
AAGTAGTGCAGCTTCTTAGAAACCCATCAAATAAGCCCCAGCGAATTATA
TTAATATTGGATTCAAGATTTATCCCTGAAGAACTGACGACCGCCAACCG
TGTGAGGCCTGACATTCACATATTTTCCGGACCTGCAATACCAAATTTGT
TAGGCGGGTCTTTCATGCCGCTGAATCTGTCCAATGCGAACTCGTGGGTG
TACTCTGTTCTATTGCAAAGTCCAATAGTTCGCCCTGCTTATCCTCGTCG
AGTTCGCTACACTTCCGTGTCTCAGTGGAGTCCTCCAATGCGTACACGAA
TGGGACGGAACGAGATTTTTCCGGAGGACATTGGAGGAGAGATACTGACG
GCAATGATGGTGAACCCAGAATTAGACACACTAATGCGCCTCGATCCCAT
TAAAGCCATGTCCCTGATCCTGCGTATTGCAAACTACTTTCTCCACTGAA
AGCTTTCTAGACCAT

BS28562.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG43098-RA 483 CG43098-PA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG43098-RA 657 CG43098-RA 65..547 17..499 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3659132..3659614 17..499 2415 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:09:38 has no hits.

BS28562.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:27 Download gff for BS28562.complete
Subject Subject Range Query Range Percent Splice Strand
CG43098-RA 57..538 17..498 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:37 Download gff for BS28562.complete
Subject Subject Range Query Range Percent Splice Strand
CG43098-RA 65..546 17..498 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:09 Download gff for BS28562.complete
Subject Subject Range Query Range Percent Splice Strand
CG43098-RA 65..546 17..498 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:09 Download gff for BS28562.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3659132..3659613 17..498 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:37 Download gff for BS28562.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3659132..3659613 17..498 100   Plus

BS28562.pep Sequence

Translation from 16 to 498

> BS28562.pep
MSARTRRYERDEVVQLLRNPSNKPQRIILILDSRFIPEELTTANRVRPDI
HIFSGPAIPNLLGGSFMPLNLSNANSWVYSVLLQSPIVRPAYPRRVRYTS
VSQWSPPMRTRMGRNEIFPEDIGGEILTAMMVNPELDTLMRLDPIKAMSL
ILRIANYFLH*

BS28562.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG43098-PA 160 CG43098-PA 1..160 1..160 823 100 Plus