BS28564.complete Sequence
716 bp assembled on 2012-03-26
GenBank Submission: KX804606
> BS28564.complete
GAAGTTATCAGTCGACATGGCACACAAGCGCCTGTTCGTCTACGCGGTGC
TACTGGTGATATGTTATTTGGTTGGCGTGACATGGGCTGAGACTGCGGCG
CAGACATTCCCAGCGATCGGCACCAACAGCAACAACAACAGCAATGCTCA
ACCTGCTCCTGTGCCTGCACCTGCAGCTCCAGCGGCTGCAGCTCCACTAG
CCAAGCAAGTTTCAGCTCCCACTGCCGCCCCTCCGGCCAAGGTCATCGGC
CAGCCTGTGCTCGCTGCTCCAGGCAAAAATTCTTCCAATTCCAGCAGCAC
AACTGAGTGCGTCTGTGCCGGTGCCCTGCTGCCCCGTTTGGATGCCAATG
GCAAGGAGCTGCCCATATGCGCCGAGTGCAAGTGCTCCCATGTGGCGAGA
AATACGACGCTGATAAAGGTCGTGGTCATTATTGTGATTTGGATCATCTC
CATTTTAGTAATATACATGCTCTTCCTGATGTGCCTGGACCCGTTGCTGA
ACAAGCGAGTGAAGGCGAACTACCAGGAGCACACCAACGAAGATGATGAA
CCAACGCCGCCCCTGCCAGCCGTCAACAACCAGGAGCTCAGTGCCAGAGC
CAATGTCCTCAATCGTGTGGGCCACCAGCAGGACAAGTGGAAGCGGCAGG
TGCGCGAGCAGAGACGCCACATCTACGACAGGCATACCATGCTAAACTAA
AAGCTTTCTAGACCAT
BS28564.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1161-RA | 684 | CG1161-PA | 1..684 | 17..700 | 3420 | 100 | Plus |
| CG1161-RC | 666 | CG1161-PC | 1..529 | 17..545 | 2645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:09:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1161-RA | 945 | CG1161-RA | 94..777 | 17..700 | 3420 | 100 | Plus |
| CG1161-RC | 1241 | CG1161-RC | 94..622 | 17..545 | 2645 | 100 | Plus |
| CG1161-RC | 1241 | CG1161-RC | 918..1073 | 545..700 | 780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5355326..5355550 | 85..309 | 1125 | 100 | Plus |
| 3R | 32079331 | 3R | 5356425..5356580 | 545..700 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 5356001..5356129 | 417..545 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 5355833..5355944 | 309..420 | 560 | 100 | Plus |
| 3R | 32079331 | 3R | 5355185..5355254 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:09:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6851 | 116..228 | 152 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2393 | 115..208 | 143 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2452..2571 | 116..224 | 142 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2424 | 116..222 | 136 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2871 | 97..192 | 129 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6875 | 116..237 | 128 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6872 | 116..216 | 124 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2502 | 121..250 | 114 | 60 | Plus |
BS28564.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:28 Download gff for
BS28564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1161-RA | 86..767 | 17..698 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:38 Download gff for
BS28564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1161-RA | 94..775 | 17..698 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:11 Download gff for
BS28564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1161-RA | 94..775 | 17..698 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:11 Download gff for
BS28564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5356425..5356578 | 545..698 | 100 | | Plus |
| 3R | 5355185..5355253 | 17..85 | 100 | -> | Plus |
| 3R | 5355327..5355550 | 86..309 | 100 | -> | Plus |
| 3R | 5355834..5355942 | 310..418 | 100 | -> | Plus |
| 3R | 5356003..5356128 | 419..544 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:38 Download gff for
BS28564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1182147..1182300 | 545..698 | 100 | | Plus |
| arm_3R | 1180907..1180975 | 17..85 | 100 | -> | Plus |
| arm_3R | 1181049..1181272 | 86..309 | 100 | -> | Plus |
| arm_3R | 1181556..1181664 | 310..418 | 100 | -> | Plus |
| arm_3R | 1181725..1181850 | 419..544 | 100 | -> | Plus |
BS28564.pep Sequence
Translation from 16 to 699
> BS28564.pep
MAHKRLFVYAVLLVICYLVGVTWAETAAQTFPAIGTNSNNNSNAQPAPVP
APAAPAAAAPLAKQVSAPTAAPPAKVIGQPVLAAPGKNSSNSSSTTECVC
AGALLPRLDANGKELPICAECKCSHVARNTTLIKVVVIIVIWIISILVIY
MLFLMCLDPLLNKRVKANYQEHTNEDDEPTPPLPAVNNQELSARANVLNR
VGHQQDKWKRQVREQRRHIYDRHTMLN*
BS28564.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1161-PA | 227 | CG1161-PA | 1..227 | 1..227 | 1183 | 100 | Plus |
| CG1161-PC | 221 | CG1161-PC | 1..176 | 1..176 | 907 | 100 | Plus |
