BS28567.complete Sequence
3179 bp assembled on 2012-04-11
GenBank Submission: KX801422
> BS28567.complete
GAAGTTATCAGTCGACATGACAATATCGGGCGGCAATCAACATAATAACA
ATGCAAATCGCAAATATGAAAAACTCATTAAGCAGCCGCAGATGCAATTT
GGTAGCTCCGTGACCGGCACCCAAACGGATGTGGATTCCTGCCGAGATGC
GGACGCGGATGCGAATGCTGTCCGCCAGGACTTTAGCAATTTCAATAAGC
ATTTCGGCAATGGTCATGCCATCACGGATCGCACAATGCTGCTGCGTTTG
GAGGACGATGTCACCACCGCCGCCGGCATTGTCACGTACAAGGGTAAATC
GAATGGCAATGGAAATGGGAATGGGAACGGAAGCATCGGGAGTATCAGTC
TGGATTTCAACGGTAGTCCTACCTCATCAACGTCAATTGGCATCGCCAGC
GGTAGCAGCAGCAACACCCACCTGGCCAGTGGTGGTGGCGTTGGTGGAAT
CGGTGGCTCCGAGCCAGCCGGTTGGATGTGCCATTGTTGTAATTTAATTG
CACGTCGCTGCTTTGGCATCAACGTTCGACGATGTGTCCTGGCGCTCCTG
GCCATTACGATGGTTAGCATTTTCTACTACACGCATTATGTCGATACGGG
CGTGTTTAATGGACTTATTCAACGCGACACGCATCCCGCACCCATTATCA
ACTGCCGCATGATCAACTCTGGTGGCAAACACATCCGGAATGCCTCCCCA
GCGCCCGACCATCGTTCCGAGGCTCGATTACGGATCGATCCCAAGGTCCT
CGTTTTTGTGGAGACCACATATTCCGGTCTCGGCAGGGACATTGCCGAGC
TGCTCGTCTACAATCGGATCAAATATAAAATCGAAGTGGCGGGCAAGAGT
TTACCAGTTCTTACCAATCTCGACAAAGGTCGTTATGGCGTGATTGTGTT
TGAGAACCTGGATAAATACCTCAATATGGACAAATGGAATAGAGAGCTGT
TGGACAAATACTGCCGGGAGTACTCCGTGGGAATTGTGGGTTTCGTGAGT
CCCAGCGAAGAGACTCTTGTTGGTGCCCAACTTCGGGACTTTCCGCTGTT
TGTTAACACGAATCTGAGGTTGAGAGACGCGAGCTTGAATCCCTTGTCAT
CAGTGCTTCGATTAACTCGAGCTGGTGAAACAGCTTGGGGAGCTCTGCCC
GGAGATGATTGGGCGGTTTTCCAGCATAATCACAGTACCTATGAGCCAGT
GGAGTGGGCGCAGAGAAACACTCAAGAGTATCCAGCGGATAGTGTGGGCC
AGGTGCAACTACCTCTTACTACTGTCCTTCAAGATCGCGGACAGTTGGAT
GGCATACAAAGAGTGCTATTCGGCAGCAGTTTGCGTTTTTGGCTTCATCG
TCTGGTCTTCCTGGATGCTCTGAGCTATCTAAGTCATGGTCAACTTAGTT
TGAATCTGGAGCGAATGATTCTAGTCGATATAGATGATATATTCGTGGGC
GAGAAGGGCACCAGACTGCGACCAGATGATGTGAGAGCCCTAATAGCCAC
CCAGAAGAATATAGCAGCAATGGTTCCAGGTTTCCGGTTCAATCTGGGAT
TCTCGGGAAAATACTATCATCATGGCACGAGGGAAGAGAATCTGGGTGAT
GATTTCCTACTGCAGAACGTTCAGGAGTTCAACTGGTTTTCGCACATGTG
GAAGCACCAGCAGCCTCATTTGTATGATAACCTAACCCTCCTGATGGCAG
AAATGCACTTAAACTACGCCTTTGCTGTGGATCACAACATACCCACGGAT
TCGGGTTACTCCATATCACCGCACCATTCAGGCGTTTACCCCGCCCATGA
GTTACTATATATGGCTTGGAAAAAGGTGTGGAACGTGAAGGTTACGTCCA
CGGAAGAGTATCCGCATTTGAGGCCAGCTCGATTGAGAAGAGGATTCATT
CATCGCAACATAATGGTGTTGCCGAGGCAAACTTGTGGTCTATTCACCCA
CACCATGTACATCGATCGCTACCCGGGGGGTAGAGATAAACTAGATGAAT
CCATACAGGGTGGAGAACTCTTCCAGACCATTGTCTATAATCCCATCAAC
ATCTTTATGACGCACATGTCCAACTATGGATCGGATCGTCTGGCTCTGTA
CACATTCCAATCGGTGATCAAGTTCCTACAGTGCTGGACCAATCTTAAGT
TGGCCTCAGCTCCGCCAGTTCAGCTGGCCGAGATGTATTTCCGGCTGCAT
CCCGAGGAGGTGGATCCCGTGTGGGGAAATCCCTGTGACGATGTGCGCCA
CAAGAAGATCTGGTCAAAGACCAAGAATTGCGATTCGTTGCCCAAGTTCT
TGGTAATTGGACCGCAGAAAACGGGCACAACTGCATTGTACACATTCCTA
TCCATGCATGGCAGTATTGCGAGTAACATCGCCAGTCCCGAAACCTTTGA
GGAGGTTCAGTTCTTCAACGGAAACAACTACTATCGTGGTCTGGACTGGT
ACATGGACTTCTTTCCATCGGAATCGCTGCCCAACACGAGTTCCCCGATG
CCCACCCAGTTGGGATCGCCACGTTTCATGTTCGAGAAGAGTGCTACCTA
TTTCGATGGCGAGGCTGTGCCCAAACGAAGTCATGCCCTGCTTCCACATG
CAAAAATCGTCACGATTCTGATATCACCTGCGAAGAGGGCCTACTCCTGG
TACCAGCATCAGCGTTCCCACGGCGATGTTATAGCCAACAACTATAGTTT
CTATCAGGTCATAACGGCAAGTGACTCGGCACCGAGGGCACTGAAGGATC
TGCGGAACCGGTGCCTAAATCCCGGCAAGTATGCCCAGCACTTGGAGCAC
TGGCTGGCCTACTATCCCGCCCAGCAGCTGCACATCATCGATGGCGAACA
GTTGCGCCTGAATCCCATCGATGTGATGAACGAGCTGCAGCGCTTCCTCA
AAATCCAGCCGCTGCTCGATTATTCAAATCACCTGCGATACGATGTGAAG
AAGGGATTCTACTGCCAGGCCGTCAGCGAGAAGCGCAATAAATGCCTCGG
AAAGTCCAAGGGACGCCAGTATCCGGCGATGGATGAGCGCAGTGCCAAGC
TGTTGCAGCGATACTATCTCAATCACAATACGGCGCTGGTGAAGCTGCTC
AAAAAGCTGGGCTCGCGGCCAATACCGCAATGGCTCAAAGACGACCTGTC
CACGGGAACGTGAAAGCTTTCTAGACCAT
BS28567.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sfl-RB | 3147 | CG8339-PB | 1..3147 | 17..3163 | 15735 | 100 | Plus |
| sfl-RA | 3147 | CG8339-PA | 1..3147 | 17..3163 | 15735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sfl-RB | 5735 | CG8339-RB | 1274..4424 | 17..3167 | 15740 | 100 | Plus |
| sfl-RA | 5772 | CG8339-RA | 1311..4461 | 17..3167 | 15740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:49:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6544468..6546354 | 823..2709 | 9435 | 100 | Plus |
| 3L | 28110227 | 3L | 6523501..6524096 | 17..612 | 2980 | 100 | Plus |
| 3L | 28110227 | 3L | 6547246..6547601 | 2705..3060 | 1780 | 100 | Plus |
| 3L | 28110227 | 3L | 6534492..6534702 | 612..822 | 1055 | 100 | Plus |
| 3L | 28110227 | 3L | 6548686..6548793 | 3060..3167 | 525 | 99.1 | Plus |
Blast to na_te.dros performed 2014-11-28 04:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 845..887 | 1137..1095 | 116 | 74.4 | Minus |
BS28567.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 15:45:33 Download gff for
BS28567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sfl-RB | 1274..4419 | 17..3162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:27 Download gff for
BS28567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sfl-RA | 1311..4456 | 17..3162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:38:00 Download gff for
BS28567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sfl-RA | 1311..4456 | 17..3162 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:38:00 Download gff for
BS28567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6523501..6524096 | 17..612 | 100 | -> | Plus |
| 3L | 6534493..6534702 | 613..822 | 100 | -> | Plus |
| 3L | 6544468..6546352 | 823..2707 | 100 | -> | Plus |
| 3L | 6547249..6547601 | 2708..3060 | 100 | -> | Plus |
| 3L | 6548687..6548788 | 3061..3162 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:27 Download gff for
BS28567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6527593..6527802 | 613..822 | 100 | -> | Plus |
| arm_3L | 6516601..6517196 | 17..612 | 100 | -> | Plus |
| arm_3L | 6541787..6541888 | 3061..3162 | 100 | | Plus |
| arm_3L | 6537568..6539452 | 823..2707 | 100 | -> | Plus |
| arm_3L | 6540349..6540701 | 2708..3060 | 100 | -> | Plus |
BS28567.pep Sequence
Translation from 16 to 3162
> BS28567.pep
MTISGGNQHNNNANRKYEKLIKQPQMQFGSSVTGTQTDVDSCRDADADAN
AVRQDFSNFNKHFGNGHAITDRTMLLRLEDDVTTAAGIVTYKGKSNGNGN
GNGNGSIGSISLDFNGSPTSSTSIGIASGSSSNTHLASGGGVGGIGGSEP
AGWMCHCCNLIARRCFGINVRRCVLALLAITMVSIFYYTHYVDTGVFNGL
IQRDTHPAPIINCRMINSGGKHIRNASPAPDHRSEARLRIDPKVLVFVET
TYSGLGRDIAELLVYNRIKYKIEVAGKSLPVLTNLDKGRYGVIVFENLDK
YLNMDKWNRELLDKYCREYSVGIVGFVSPSEETLVGAQLRDFPLFVNTNL
RLRDASLNPLSSVLRLTRAGETAWGALPGDDWAVFQHNHSTYEPVEWAQR
NTQEYPADSVGQVQLPLTTVLQDRGQLDGIQRVLFGSSLRFWLHRLVFLD
ALSYLSHGQLSLNLERMILVDIDDIFVGEKGTRLRPDDVRALIATQKNIA
AMVPGFRFNLGFSGKYYHHGTREENLGDDFLLQNVQEFNWFSHMWKHQQP
HLYDNLTLLMAEMHLNYAFAVDHNIPTDSGYSISPHHSGVYPAHELLYMA
WKKVWNVKVTSTEEYPHLRPARLRRGFIHRNIMVLPRQTCGLFTHTMYID
RYPGGRDKLDESIQGGELFQTIVYNPINIFMTHMSNYGSDRLALYTFQSV
IKFLQCWTNLKLASAPPVQLAEMYFRLHPEEVDPVWGNPCDDVRHKKIWS
KTKNCDSLPKFLVIGPQKTGTTALYTFLSMHGSIASNIASPETFEEVQFF
NGNNYYRGLDWYMDFFPSESLPNTSSPMPTQLGSPRFMFEKSATYFDGEA
VPKRSHALLPHAKIVTILISPAKRAYSWYQHQRSHGDVIANNYSFYQVIT
ASDSAPRALKDLRNRCLNPGKYAQHLEHWLAYYPAQQLHIIDGEQLRLNP
IDVMNELQRFLKIQPLLDYSNHLRYDVKKGFYCQAVSEKRNKCLGKSKGR
QYPAMDERSAKLLQRYYLNHNTALVKLLKKLGSRPIPQWLKDDLSTGT*
BS28567.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:21:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sfl-PB | 1048 | CG8339-PB | 1..1048 | 1..1048 | 5602 | 100 | Plus |
| sfl-PA | 1048 | CG8339-PA | 1..1048 | 1..1048 | 5602 | 100 | Plus |
| Hs3st-B-PB | 384 | CG7890-PB | 131..376 | 758..1027 | 288 | 30.5 | Plus |
| Hs3st-B-PA | 384 | CG7890-PA | 131..376 | 758..1027 | 288 | 30.5 | Plus |
| Hs3st-A-PB | 605 | CG33147-PB | 485..596 | 915..1028 | 166 | 28.9 | Plus |
