BS28571.complete Sequence
452 bp assembled on 2012-03-26
GenBank Submission: KX802099
> BS28571.complete
GAAGTTATCAGTCGACATGTTTAGTTTTCTGAGCATTGAGGCTAGGTCAT
TGGAGGAAACCTCTGTCAAGACGAAACGCGATACCGACTGGTGGACTATC
CTCGAGGATATACTCTATGACAATGATAGTGATAGTGATGATGCCGGCGA
TGAGAACGTTTTGATTTGTCGTAACTGCACGGTAGTTGTTCAAGCTGCTC
CAAACGCCACAGCGAATGGAAGCACTGTAGCTCCGCAGGCAGGTGGAGCA
GCTCCAGGGAGTTCACCAGGTGCGCCTGCCACTCCTCCTGGCTCGACTCC
TGCAGTTCCAGCCACAGTTGCACCCGAAACGCCTGCTCCGTCGGCACCTG
CGACATCGCCACAACCTGTAGTAACTGCCCTACCCACAGCTGCCCCACCT
ACAGCTGCCCCACCCACAGCTGCCCCTGGTGGTTAGAAGCTTTCTAGACC
AT
BS28571.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7443-RA | 420 | CG7443-PA | 1..420 | 17..436 | 2100 | 100 | Plus |
| CG7443-RB | 396 | CG7443-PB | 146..396 | 186..436 | 1255 | 100 | Plus |
| CG7443-RB | 396 | CG7443-PB | 1..146 | 17..162 | 730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7443-RA | 616 | CG7443-RA | 62..482 | 17..437 | 2105 | 100 | Plus |
| CG7443-RB | 592 | CG7443-RB | 207..458 | 186..437 | 1260 | 100 | Plus |
| CG7443-RB | 592 | CG7443-RB | 62..207 | 17..162 | 730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:09:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8324627..8324902 | 162..437 | 1380 | 100 | Plus |
| 3R | 32079331 | 3R | 8324485..8324573 | 73..161 | 445 | 100 | Plus |
| 3R | 32079331 | 3R | 8324377..8324433 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:09:31 has no hits.
BS28571.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:26 Download gff for
BS28571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7443-RA | 49..462 | 23..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:32 Download gff for
BS28571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7443-RA | 68..481 | 23..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:06 Download gff for
BS28571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7443-RA | 68..481 | 23..436 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:06 Download gff for
BS28571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8324383..8324433 | 23..73 | 100 | -> | Plus |
| 3R | 8324486..8324573 | 74..161 | 100 | -> | Plus |
| 3R | 8324627..8324901 | 162..436 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:32 Download gff for
BS28571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4150105..4150155 | 23..73 | 100 | -> | Plus |
| arm_3R | 4150208..4150295 | 74..161 | 100 | -> | Plus |
| arm_3R | 4150349..4150623 | 162..436 | 100 | | Plus |
BS28571.pep Sequence
Translation from 16 to 435
> BS28571.pep
MFSFLSIEARSLEETSVKTKRDTDWWTILEDILYDNDSDSDDAGDENVLI
CRNCTVVVQAAPNATANGSTVAPQAGGAAPGSSPGAPATPPGSTPAVPAT
VAPETPAPSAPATSPQPVVTALPTAAPPTAAPPTAAPGG*
BS28571.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7443-PA | 139 | CG7443-PA | 1..139 | 1..139 | 727 | 100 | Plus |
| CG7443-PB | 131 | CG7443-PB | 1..131 | 1..139 | 658 | 93.5 | Plus |
