Clone BS28573 Report

Search the DGRC for BS28573

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptTaf11-RA
Protein status:BS28573.pep: full length peptide match
Sequenced Size:623

Clone Sequence Records

BS28573.complete Sequence

623 bp assembled on 2012-03-26

GenBank Submission: KX803510

> BS28573.complete
GAAGTTATCAGTCGACATGGACGAAATCCTCTTTCCCACGCAGCAAAAAA
GCAACTCCCTAAGCGACGGCGACGATGTCGACCTGAAATTCTTCCAGTCG
GCCTCCGGCGAGCGGAAGGACAGCGACACCTCGGATCCGGGAAACGATGC
GGATCGTGATGGCAAGGATGCGGATGGGGACAACGACAACAAGAACACGG
ACGGAGATGGTGACTCTGGCGAGCCGGCGCACAAAAAGCTCAAGACGAAG
AAGGAACTGGAGGAGGAGGAGCGCGAACGAATGCAGGTTCTCGTTTCCAA
CTTTACGGAAGAACAGCTGGATCGCTACGAAATGTATCGTCGCTCTGCCT
TTCCCAAGGCCGCCGTCAAGCGTCTAATGCAAACTATCACCGGCTGTTCC
GTGTCCCAGAATGTTGTGATAGCCATGTCCGGCATTGCGAAGGTCTTCGT
CGGCGAGGTTGTGGAGGAAGCCCTCGACGTGATGGAGGCCCAAGGTGAAT
CCGGTGCCCTGCAGCCCAAATTCATACGAGAGGCAGTGCGACGACTGAGG
ACCAAGGATCGGATGCCCATAGGCAGATACCAGCAGCCCTATTTCAGACT
GAACTAGAAGCTTTCTAGACCAT

BS28573.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Taf11-RA 591 CG4079-PA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Taf11-RA 777 CG4079-RA 89..679 17..607 2955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9762522..9762843 607..286 1610 100 Minus
2L 23513712 2L 9762905..9763174 286..17 1350 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:09:52 has no hits.

BS28573.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:30 Download gff for BS28573.complete
Subject Subject Range Query Range Percent Splice Strand
Taf11-RA 71..661 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:46 Download gff for BS28573.complete
Subject Subject Range Query Range Percent Splice Strand
Taf11-RA 89..679 17..607 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:18 Download gff for BS28573.complete
Subject Subject Range Query Range Percent Splice Strand
Taf11-RA 89..679 17..607 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:18 Download gff for BS28573.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9762522..9762843 286..607 100 <- Minus
2L 9762906..9763174 17..285 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:46 Download gff for BS28573.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9762522..9762843 286..607 100 <- Minus
arm_2L 9762906..9763174 17..285 100   Minus

BS28573.pep Sequence

Translation from 16 to 606

> BS28573.pep
MDEILFPTQQKSNSLSDGDDVDLKFFQSASGERKDSDTSDPGNDADRDGK
DADGDNDNKNTDGDGDSGEPAHKKLKTKKELEEEERERMQVLVSNFTEEQ
LDRYEMYRRSAFPKAAVKRLMQTITGCSVSQNVVIAMSGIAKVFVGEVVE
EALDVMEAQGESGALQPKFIREAVRRLRTKDRMPIGRYQQPYFRLN*

BS28573.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Taf11-PA 196 CG4079-PA 1..196 1..196 1002 100 Plus