BS28574.complete Sequence
824 bp assembled on 2012-03-26
GenBank Submission: KX805570
> BS28574.complete
GAAGTTATCAGTCGACATGTGCGAAAAGGTCACCGCGCGCTGCACTTGGC
CCCAGCTGTCGGGCAACGGGCTGGACCAACTGGTGGCCACCCGCTTGTCC
GACGAAGACGTCTTTGTGAAGCCCGACTTGGACGACGTGATCGACGAGAA
TCGCGCCGTGCTGTTTTCCATGCAGTCGGCGGATCCGCCGCCGCCTTGTG
AGCTGCGCTTCCAGATCCCGAACCGCTTCAAAATCGCCGCGCTCACCCTG
ATTTGCAGCGCTCCCAAGGTGGAGCTGTTCATTGGACCCTTGCAGGAGTA
CTGCGAGACCATCTACGGCACTTGCGTCGACGATGAGGACCCAGAGGTTG
CGGTGCGACCCTATCGCTATGACATGGAAATCGACCGATCCGGGATAAAT
GACATAAACCTGAAGATGCTCACCTCGGCCAGCGAGATCTGCGTTTACGG
AGCCCTGCTCCAGGTGGCGCCGAATCCCAACGGCATAACCACCCAGTTGC
CCAGGCCAATGGATGCGCAGCGAATCCAAGAGCTGCTGCAAAGGGGTGGC
ACGAGTCCCTTGAAGAAGGAGGAGCAGGCCGAAAAGTTCGAGCAGTTCAT
GAGCCTGATGAAGGGCTATTCCCCGCAGGCGAAGGACCAAACCCAAGAGA
CTGCACCGCCTTCCACCGATGTTGCAATCCTCAAGGAGCACATCGACATG
AGATTTGAGAAGCTGACGCTGTTAGTGTCTAAGAGACTGGACAACTTCGA
GGCCCAGCAGACGGAAAAGTTAAACAAAATTATTGCCTTGCTGGAAAAGG
AAAAATAAAAGCTTTCTAGACCAT
BS28574.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:09:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11882-RB | 792 | CG11882-PB | 1..792 | 17..808 | 3960 | 100 | Plus |
CG11882-RA | 792 | CG11882-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11882-RB | 1018 | CG11882-RB | 49..841 | 16..808 | 3965 | 100 | Plus |
CG11882-RA | 1087 | CG11882-RA | 118..910 | 16..808 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29147193..29147880 | 808..121 | 3440 | 100 | Minus |
3R | 32079331 | 3R | 29147950..29148055 | 121..16 | 530 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:09:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 723..764 | 769..810 | 111 | 73.8 | Plus |
BS28574.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:31 Download gff for
BS28574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11882-RA | 119..896 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:47 Download gff for
BS28574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11882-RA | 119..896 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:20 Download gff for
BS28574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11882-RA | 119..896 | 17..794 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:20 Download gff for
BS28574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29147207..29147880 | 121..794 | 100 | <- | Minus |
3R | 29147951..29148054 | 17..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:47 Download gff for
BS28574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24972929..24973602 | 121..794 | 100 | <- | Minus |
arm_3R | 24973673..24973776 | 17..120 | 100 | | Minus |
BS28574.pep Sequence
Translation from 16 to 807
> BS28574.pep
MCEKVTARCTWPQLSGNGLDQLVATRLSDEDVFVKPDLDDVIDENRAVLF
SMQSADPPPPCELRFQIPNRFKIAALTLICSAPKVELFIGPLQEYCETIY
GTCVDDEDPEVAVRPYRYDMEIDRSGINDINLKMLTSASEICVYGALLQV
APNPNGITTQLPRPMDAQRIQELLQRGGTSPLKKEEQAEKFEQFMSLMKG
YSPQAKDQTQETAPPSTDVAILKEHIDMRFEKLTLLVSKRLDNFEAQQTE
KLNKIIALLEKEK*
BS28574.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11882-PB | 263 | CG11882-PB | 1..263 | 1..263 | 1360 | 100 | Plus |
CG11882-PA | 263 | CG11882-PA | 1..263 | 1..263 | 1360 | 100 | Plus |