Clone BS28574 Report

Search the DGRC for BS28574

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG11882-RA
Protein status:BS28574.pep: full length peptide match
Sequenced Size:824

Clone Sequence Records

BS28574.complete Sequence

824 bp assembled on 2012-03-26

GenBank Submission: KX805570

> BS28574.complete
GAAGTTATCAGTCGACATGTGCGAAAAGGTCACCGCGCGCTGCACTTGGC
CCCAGCTGTCGGGCAACGGGCTGGACCAACTGGTGGCCACCCGCTTGTCC
GACGAAGACGTCTTTGTGAAGCCCGACTTGGACGACGTGATCGACGAGAA
TCGCGCCGTGCTGTTTTCCATGCAGTCGGCGGATCCGCCGCCGCCTTGTG
AGCTGCGCTTCCAGATCCCGAACCGCTTCAAAATCGCCGCGCTCACCCTG
ATTTGCAGCGCTCCCAAGGTGGAGCTGTTCATTGGACCCTTGCAGGAGTA
CTGCGAGACCATCTACGGCACTTGCGTCGACGATGAGGACCCAGAGGTTG
CGGTGCGACCCTATCGCTATGACATGGAAATCGACCGATCCGGGATAAAT
GACATAAACCTGAAGATGCTCACCTCGGCCAGCGAGATCTGCGTTTACGG
AGCCCTGCTCCAGGTGGCGCCGAATCCCAACGGCATAACCACCCAGTTGC
CCAGGCCAATGGATGCGCAGCGAATCCAAGAGCTGCTGCAAAGGGGTGGC
ACGAGTCCCTTGAAGAAGGAGGAGCAGGCCGAAAAGTTCGAGCAGTTCAT
GAGCCTGATGAAGGGCTATTCCCCGCAGGCGAAGGACCAAACCCAAGAGA
CTGCACCGCCTTCCACCGATGTTGCAATCCTCAAGGAGCACATCGACATG
AGATTTGAGAAGCTGACGCTGTTAGTGTCTAAGAGACTGGACAACTTCGA
GGCCCAGCAGACGGAAAAGTTAAACAAAATTATTGCCTTGCTGGAAAAGG
AAAAATAAAAGCTTTCTAGACCAT

BS28574.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11882-RB 792 CG11882-PB 1..792 17..808 3960 100 Plus
CG11882-RA 792 CG11882-PA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11882-RB 1018 CG11882-RB 49..841 16..808 3965 100 Plus
CG11882-RA 1087 CG11882-RA 118..910 16..808 3965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29147193..29147880 808..121 3440 100 Minus
3R 32079331 3R 29147950..29148055 121..16 530 100 Minus
Blast to na_te.dros performed 2014-11-28 04:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 723..764 769..810 111 73.8 Plus

BS28574.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:31 Download gff for BS28574.complete
Subject Subject Range Query Range Percent Splice Strand
CG11882-RA 119..896 17..794 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:47 Download gff for BS28574.complete
Subject Subject Range Query Range Percent Splice Strand
CG11882-RA 119..896 17..794 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:20 Download gff for BS28574.complete
Subject Subject Range Query Range Percent Splice Strand
CG11882-RA 119..896 17..794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:20 Download gff for BS28574.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29147207..29147880 121..794 100 <- Minus
3R 29147951..29148054 17..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:47 Download gff for BS28574.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24972929..24973602 121..794 100 <- Minus
arm_3R 24973673..24973776 17..120 100   Minus

BS28574.pep Sequence

Translation from 16 to 807

> BS28574.pep
MCEKVTARCTWPQLSGNGLDQLVATRLSDEDVFVKPDLDDVIDENRAVLF
SMQSADPPPPCELRFQIPNRFKIAALTLICSAPKVELFIGPLQEYCETIY
GTCVDDEDPEVAVRPYRYDMEIDRSGINDINLKMLTSASEICVYGALLQV
APNPNGITTQLPRPMDAQRIQELLQRGGTSPLKKEEQAEKFEQFMSLMKG
YSPQAKDQTQETAPPSTDVAILKEHIDMRFEKLTLLVSKRLDNFEAQQTE
KLNKIIALLEKEK*

BS28574.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11882-PB 263 CG11882-PB 1..263 1..263 1360 100 Plus
CG11882-PA 263 CG11882-PA 1..263 1..263 1360 100 Plus