BS28575.complete Sequence
782 bp assembled on 2012-03-26
GenBank Submission: KX801331
> BS28575.complete
GAAGTTATCAGTCGACATGAGCGGAAAGATGGTCTTCATTGTGCTCGTCG
CCGTGTTGGGCTCCACTTTTGCCCAGGAGCAGCCCTACTACCTGCAACAG
TGCCCACGGGACGAGGCCCAGATAAACGAATGCCTTCGCGAAAGTGGCAA
CAAGCTGGTGCACTACCTGCAGAAGGGAGTGCCGGAGTTGGACATCTATG
AGATCGAACCCGTGATGATTGATGAAATCGGCATTGTGTTGGGCAGTGGT
CCGGATGGCTACCGCGCACTTTTCCGGAACATTCAGGCCTACGGTGTGAG
CAATATCACAGTGACCAACATCCGCTCCGACTTGGACTCGCTGCAGTTCC
AGCTGACGTGCGAGATACCCCGCATTCGCGTCAAGGCGCAGTACCGGTCC
ACAGGTGTTCTGATCTTGGTGAAGGCCTCCGGAGCCGGCGACTACTGGGG
GGAGTACGAGGGAGTTAAGGCCAAGATCTACTTCAAGGCGGTGGCCAATG
AGGGTCCCGACGGTCGCACCTACCTGACGACGGACTCCGTCAAGATGGAC
TTCAACGTGAAGGAGATCCAAATGGGTGTGGACAACATCGCCAATGGCAA
CACAGTGATACAGGCTGCTCTCAATCTGTTCATCAACTCCAACTCCCAGG
AGCTGCTCAAGGAAATGAAGCCGGCGCTCAGGACCAAACTCACTCTGGTC
ATCCGCAACTTCATGGATCGCATATTCGCCAAGATTCCGCTGGACGAGTG
GATCAACCTGAATTAGAAGCTTTCTAGACCAT
BS28575.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2016-RD | 750 | CG2016-PD | 1..750 | 17..766 | 3750 | 100 | Plus |
| CG2016-RB | 750 | CG2016-PB | 1..750 | 17..766 | 3750 | 100 | Plus |
| CG2016-RE | 765 | CG2016-PE | 1..765 | 17..766 | 3565 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2016-RD | 1211 | CG2016-RD | 392..1143 | 17..768 | 3760 | 100 | Plus |
| CG2016-RB | 873 | CG2016-RB | 54..805 | 17..768 | 3760 | 100 | Plus |
| CG2016-RE | 888 | CG2016-RE | 54..820 | 17..768 | 3575 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4957067..4957223 | 768..612 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 4957290..4957443 | 611..458 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 4957501..4957635 | 458..324 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 4959637..4959760 | 324..201 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 4959904..4960022 | 202..84 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 4960894..4960960 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:10:00 has no hits.
BS28575.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:31 Download gff for
BS28575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2016-RB | 51..800 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:50 Download gff for
BS28575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2016-RB | 54..803 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:21 Download gff for
BS28575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2016-RB | 54..803 | 17..766 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:21 Download gff for
BS28575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4957069..4957223 | 612..766 | 100 | <- | Minus |
| 3R | 4957290..4957442 | 459..611 | 100 | <- | Minus |
| 3R | 4957501..4957634 | 325..458 | 100 | <- | Minus |
| 3R | 4959637..4959758 | 203..324 | 100 | <- | Minus |
| 3R | 4959904..4960022 | 84..202 | 100 | <- | Minus |
| 3R | 4960894..4960960 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:50 Download gff for
BS28575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 782791..782945 | 612..766 | 100 | <- | Minus |
| arm_3R | 783012..783164 | 459..611 | 100 | <- | Minus |
| arm_3R | 783223..783356 | 325..458 | 100 | <- | Minus |
| arm_3R | 785359..785480 | 203..324 | 100 | <- | Minus |
| arm_3R | 785626..785744 | 84..202 | 100 | <- | Minus |
| arm_3R | 786616..786682 | 17..83 | 100 | | Minus |
BS28575.pep Sequence
Translation from 16 to 765
> BS28575.pep
MSGKMVFIVLVAVLGSTFAQEQPYYLQQCPRDEAQINECLRESGNKLVHY
LQKGVPELDIYEIEPVMIDEIGIVLGSGPDGYRALFRNIQAYGVSNITVT
NIRSDLDSLQFQLTCEIPRIRVKAQYRSTGVLILVKASGAGDYWGEYEGV
KAKIYFKAVANEGPDGRTYLTTDSVKMDFNVKEIQMGVDNIANGNTVIQA
ALNLFINSNSQELLKEMKPALRTKLTLVIRNFMDRIFAKIPLDEWINLN*
BS28575.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2016-PD | 249 | CG2016-PD | 1..249 | 1..249 | 1274 | 100 | Plus |
| CG2016-PB | 249 | CG2016-PB | 1..249 | 1..249 | 1274 | 100 | Plus |
| CG2016-PE | 254 | CG2016-PE | 1..254 | 1..249 | 1255 | 97.6 | Plus |
| CG2016-PC | 183 | CG2016-PC | 1..183 | 67..249 | 931 | 100 | Plus |
| CG1124-PA | 246 | CG1124-PA | 3..243 | 4..245 | 370 | 29.8 | Plus |
