Clone BS28579 Report

Search the DGRC for BS28579

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG15027-RA
Protein status:BS28579.pep: gold
Sequenced Size:575

Clone Sequence Records

BS28579.complete Sequence

575 bp assembled on 2012-03-26

GenBank Submission: KX805313

> BS28579.complete
GAAGTTATCAGTCGACATGACGAATCTGCGCAAGGAACTGGAGAAATGCA
AGCACCCCAACAGCCGGAAAACCAAGGCGCTGGGCAAGAAGGCACGTCGC
CAAAACAACAAGCACAAGGTCCGTTTGGGTCATGCCATCAAAAGCAACAT
CACTGGCGAGAAGTTGAGCTGGTTTCTCGGCCAAATCGATGAGGGACGCA
CTGAACCGCTGAGGCCGCAGGAGCTGGAGGATCTGATTGAGCTCTATTTT
ACGCGATTCGACGAGGAGCTGGAGCAGATTAACCTAAAGCAGTCGATTGG
CAAACATCGGGCCAATCAGCATGCCGCCCGCAAGGATGTGATCACCATGA
CGCTGGAGAAGGAGCGCAACGAATTCCGCACTGGCGGTCTGGAGCTGATG
AACCTCTGCGATCCACTCAAGCTGAAAATGCTGCGCGATTGGGACGGCAG
TGCGCTCAGTGTGCAGCACCTGAAACTCGACCTAGTCTCCTATAACATGC
TGCAGCGGCTGAAGGAGCAGTCTAAGAAAAAAGAAACCAGCGAGCAGATG
GAAACATAAAAGCTTTCTAGACCAT

BS28579.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG15027-RA 543 CG15027-PA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15027-RA 602 CG15027-RA 38..582 17..561 2725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15085179..15085721 561..19 2715 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:10:07 has no hits.

BS28579.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:33 Download gff for BS28579.complete
Subject Subject Range Query Range Percent Splice Strand
CG15027-RA 18..552 17..551 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:54 Download gff for BS28579.complete
Subject Subject Range Query Range Percent Splice Strand
CG15027-RA 38..572 17..551 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:25 Download gff for BS28579.complete
Subject Subject Range Query Range Percent Splice Strand
CG15027-RA 38..572 17..551 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:25 Download gff for BS28579.complete
Subject Subject Range Query Range Percent Splice Strand
X 15085189..15085722 17..551 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:54 Download gff for BS28579.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14979222..14979755 17..551 99   Minus

BS28579.pep Sequence

Translation from 16 to 558

> BS28579.pep
MTNLRKELEKCKHPNSRKTKALGKKARRQNNKHKVRLGHAIKSNITGEKL
SWFLGQIDEGRTEPLRPQELEDLIELYFTRFDEELEQINLKQSIGKHRAN
QHAARKDVITMTLEKERNEFRTGGLELMNLCDPLKLKMLRDWDGSALSVQ
HLKLDLVSYNMLQRLKEQSKKKETSEQMET*

BS28579.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG15027-PA 180 CG15027-PA 1..180 1..180 929 100 Plus