Clone BS28580 Report

Search the DGRC for BS28580

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG8157-RA
Protein status:BS28580.pep: gold
Sequenced Size:374

Clone Sequence Records

BS28580.complete Sequence

374 bp assembled on 2012-03-26

GenBank Submission: KX803773

> BS28580.complete
GAAGTTATCAGTCGACATGAAACTACTGATTGTTGTTCTTGCCCTGGTGG
CCGCAGTTTTGGCCAGACCTCAATTTGGACCTGGTGGTCAAGGAGGATTT
GGTGGTCAACAAGGCGGCTTTGGTGGACAGGGAGGATTCGGTGGAGGTCC
TGGATTTGGTGGACAAGGTGGTTTCGGTGGCGGACCCGGAGAATATGGCG
GTCAAGGTGGTTTCGGTGGCGGACCGGGAGGATATGGCGGTCAAGGTGGT
TTCGGTGGCGGACCGGGAGGATTTGGCGGTCAAGGTGGTTTCGGTGGCGG
ACAAGGCGGCTTTGGCGAACACCACAGACACCATGGAGGACATCATGGGC
GCTTCTAAAAGCTTTCTAGACCAT

BS28580.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8157-RB 342 CG8157-PB 1..342 17..358 1710 100 Plus
CG8157-RA 342 CG8157-PA 1..342 17..358 1710 100 Plus
CG8157-RB 342 CG8157-PB 103..262 155..317 495 88.3 Plus
CG8157-RB 342 CG8157-PB 139..301 119..278 495 88.3 Plus
CG8157-RA 342 CG8157-PA 103..262 155..317 495 88.3 Plus
CG8157-RA 342 CG8157-PA 139..301 119..278 495 88.3 Plus
CG8157-RB 342 CG8157-PB 136..208 230..302 275 91.8 Plus
CG8157-RB 342 CG8157-PB 214..286 152..224 275 91.8 Plus
CG8157-RA 342 CG8157-PA 136..208 230..302 275 91.8 Plus
CG8157-RA 342 CG8157-PA 214..286 152..224 275 91.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8157-RB 824 CG8157-RB 25..366 17..358 1710 100 Plus
CG8157-RA 427 CG8157-RA 25..366 17..358 1710 100 Plus
CG8157-RB 824 CG8157-RB 127..286 155..317 495 88.3 Plus
CG8157-RB 824 CG8157-RB 163..325 119..278 495 88.3 Plus
CG8157-RA 427 CG8157-RA 127..286 155..317 495 88.3 Plus
CG8157-RA 427 CG8157-RA 163..325 119..278 495 88.3 Plus
CG8157-RB 824 CG8157-RB 160..232 230..302 275 91.8 Plus
CG8157-RB 824 CG8157-RB 238..310 152..224 275 91.8 Plus
CG8157-RA 427 CG8157-RA 160..232 230..302 275 91.8 Plus
CG8157-RA 427 CG8157-RA 238..310 152..224 275 91.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15325961..15326291 358..28 1655 100 Minus
2R 25286936 2R 15326002..15326164 278..119 495 88.3 Minus
2R 25286936 2R 15326041..15326200 317..155 495 88.3 Minus
2R 25286936 2R 15326017..15326089 224..152 275 91.8 Minus
2R 25286936 2R 15326095..15326167 302..230 275 91.8 Minus
Blast to na_te.dros performed 2014-11-28 04:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 2429..2451 12..34 106 95.7 Plus

BS28580.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:33 Download gff for BS28580.complete
Subject Subject Range Query Range Percent Splice Strand
CG8157-RA 22..361 17..356 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:57 Download gff for BS28580.complete
Subject Subject Range Query Range Percent Splice Strand
CG8157-RA 25..364 17..356 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:28 Download gff for BS28580.complete
Subject Subject Range Query Range Percent Splice Strand
CG8157-RA 25..364 17..356 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:28 Download gff for BS28580.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15325963..15326293 24..356 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:57 Download gff for BS28580.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11213468..11213798 24..356 99   Minus

BS28580.pep Sequence

Translation from 16 to 357

> BS28580.pep
MKLLIVVLALVAAVLARPQFGPGGQGGFGGQQGGFGGQGGFGGGPGFGGQ
GGFGGGPGEYGGQGGFGGGPGGYGGQGGFGGGPGGFGGQGGFGGGQGGFG
EHHRHHGGHHGRF*

BS28580.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8157-PB 113 CG8157-PB 1..113 1..113 653 100 Plus
CG8157-PA 113 CG8157-PA 1..113 1..113 653 100 Plus
CG7296-PB 161 CG7296-PB 1..123 1..108 292 53.6 Plus
CG7296-PA 161 CG7296-PA 1..123 1..108 292 53.6 Plus
CG7299-PC 177 CG7299-PC 1..125 1..100 277 51.9 Plus
CG7296-PB 161 CG7296-PB 85..161 21..100 150 43.8 Plus
CG7296-PA 161 CG7296-PA 85..161 21..100 150 43.8 Plus