Clone BS28581 Report

Search the DGRC for BS28581

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG14184-RA
Protein status:BS28581.pep: full length peptide match
Sequenced Size:575

Clone Sequence Records

BS28581.complete Sequence

575 bp assembled on 2012-03-26

GenBank Submission: KX804410

> BS28581.complete
GAAGTTATCAGTCGACATGGAGTATGTGCACTCTGTTTGGAGCTACCTAG
CCTCGATCTGCAACTGCTGGCAATGCACCGAAGATCCAGGTGCGCAGCCC
AACGAGCCGAACGAGCGGACACACCTTCTCGTGGACCCGGTGAACCATAG
TCCTGCCCTTCGACGGAGCAACTCCGATGGCCTCAGCACCGACTACGCCC
ACTCCCTTCCCAAGAAGGACGATCAGAACGCCCTCTCCAGACTGGTGCAG
AATACTGCGATAAACATGATAAACGTTGGAGCCATGGACTGTCACAGCCT
GGAGCACCAGGAGTACGCCGATAGAATAAGATTGTACTCGCAGCGGTTGC
ATCAACAGTGGAACAACGGCCAGCACGCCAGTATCGCACCAAAAGGTCTC
CTTAAAGATGTACCAAGCCATCAGTTCTATCTGTCTAAGCCAACCTATCC
AGATGACACTGCTCAAATGAAGCTCTTCACCGAGAAGGCACACATCAGTG
TCTCGCACATACAGATCGACCACAAAGAGGCCGTGGTTGTTCCCTTCCGG
ATTCCCTGAAAGCTTTCTAGACCAT

BS28581.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14184-RB 543 CG14184-PB 1..543 17..559 2715 100 Plus
CG14184-RA 543 CG14184-PA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14184-RB 656 CG14184-RB 69..611 17..559 2715 100 Plus
CG14184-RA 759 CG14184-RA 69..611 17..559 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20028646..20028813 261..94 840 100 Minus
3L 28110227 3L 20028243..20028378 397..262 680 100 Minus
3L 28110227 3L 20027967..20028059 559..467 465 100 Minus
3L 28110227 3L 20028872..20028952 97..17 405 100 Minus
3L 28110227 3L 20028111..20028191 470..390 375 97.5 Minus
Blast to na_te.dros performed on 2014-11-28 04:10:17 has no hits.

BS28581.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:34 Download gff for BS28581.complete
Subject Subject Range Query Range Percent Splice Strand
CG14184-RB 87..628 17..558 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:58 Download gff for BS28581.complete
Subject Subject Range Query Range Percent Splice Strand
CG14184-RA 69..610 17..558 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:29 Download gff for BS28581.complete
Subject Subject Range Query Range Percent Splice Strand
CG14184-RA 69..610 17..558 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:29 Download gff for BS28581.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20027968..20028059 467..558 100 <- Minus
3L 20028115..20028185 396..466 100 <- Minus
3L 20028245..20028378 262..395 100 <- Minus
3L 20028646..20028809 98..261 100 <- Minus
3L 20028872..20028952 17..97 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:58 Download gff for BS28581.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20021068..20021159 467..558 100 <- Minus
arm_3L 20021215..20021285 396..466 100 <- Minus
arm_3L 20021345..20021478 262..395 100 <- Minus
arm_3L 20021746..20021909 98..261 100 <- Minus
arm_3L 20021972..20022052 17..97 100   Minus

BS28581.pep Sequence

Translation from 16 to 558

> BS28581.pep
MEYVHSVWSYLASICNCWQCTEDPGAQPNEPNERTHLLVDPVNHSPALRR
SNSDGLSTDYAHSLPKKDDQNALSRLVQNTAINMINVGAMDCHSLEHQEY
ADRIRLYSQRLHQQWNNGQHASIAPKGLLKDVPSHQFYLSKPTYPDDTAQ
MKLFTEKAHISVSHIQIDHKEAVVVPFRIP*

BS28581.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14184-PB 180 CG14184-PB 1..180 1..180 975 100 Plus
CG14184-PA 180 CG14184-PA 1..180 1..180 975 100 Plus