BS28583.complete Sequence
1178 bp assembled on 2012-03-26
GenBank Submission: KX803844
> BS28583.complete
GAAGTTATCAGTCGACATGTTAAAGTCGCTAGCTCCGATCGAAGGAAACC
AACAGCCCGTGCTGCAGTTGCTCTGGGAGGACAAGGAGGTCAAATTTGAT
GTGCCTCAACTGCACAAGAACCTGCGGAGCGGAGAACGAGTGCTCGACTA
CATTTACCACATCGAAGACAGCAAAGGAAATCCGGGGGACACTGGTCGCC
TGATGGTAACCAATTTGCGAATTATATGGCACTCGCTGGTCCACAAGAAG
TACAATCTGTCCATTGGCTATGCTCGGATTGGCAACACCAACACTCGGGT
AGTTCATATGCACTCCAAAGCAAGGATAGCCAGCCAGGCCCTCTACATCC
TGGCGGTAAGCAACGAGACCCGCTTTGAGTTCCTTTTCACCGACGTATCT
GGGGAAACGTCGCGTCGCGATCAGCCGATCTTCGCCAGCGTGTTCGACGT
ATATCACCTTTATCAGCGTACTTATCTCTACCGCGACCTGAAGCTGCGCG
GAGCCATCGTTCAAGCGGGTCAACTGGTTATCCTACCAGATGAGGAGGTC
TTTAGCCATGTGCAGGGCGTGTGGAATTTGTCTAGCGACCAGGGCAACCT
GGGCAGCTTCGTGGTAACCAATATTCGGCTGGTGTGGTTTGCAGATGCCA
ACGAGACCTTCAACATCAGTCTACCATATCTACAGATTGAGAGTCTTCGC
GTTCGGGAGTCCAAGTACGGACCTGCTTTGGTAATCCAAACAGCGGAAAC
GGGAGGAGGATATGTGCTCGGATTCCGTGTCGATCCCGCCGAGCGGCTAA
ACGAGTTGTTCAAAGAGCTAAGCTCGCTGCACACAGTTTACGGCGAGCAT
CCCAACTTTGGCATCCAATACAATGCGAATGACGCCAGGCGGCGATTGGA
GGCGGCTTCCGAGGAAGCTGCGCAGGCCTCCCAGATCAAGGTGGATAACT
TCGAGGAGCTGGACGAGCGGCAGGAGCGGGAGATCAACACCAAGCTCAAC
AGCTACCTCGCCGAGGGCTGTTTGGGAAAGGTGCCCAGTCAGGGCGAGAG
AGCTCCGGTTTACTGCAAGGAGCTGGGCTTTGCCATGGAGCCAATTGGGG
ATGGCTACAAATTGCAAGACCTGTGGAATGTTATGCCCACCAAAATGGAA
ACGATGGAATGAAAGCTTTCTAGACCAT
BS28583.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:19:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1126-RA | 1146 | CG1126-PA | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:19:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1126-RA | 1228 | CG1126-RA | 17..1163 | 17..1163 | 5735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:19:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4817243..4817711 | 695..1163 | 2345 | 100 | Plus |
| 3R | 32079331 | 3R | 4816952..4817189 | 457..694 | 1190 | 100 | Plus |
| 3R | 32079331 | 3R | 4816696..4816891 | 261..456 | 980 | 100 | Plus |
| 3R | 32079331 | 3R | 4816487..4816635 | 112..260 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 4816334..4816429 | 17..112 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:19:53 has no hits.
BS28583.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 14:32:00 Download gff for
BS28583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1126-RA | 6..1145 | 22..1161 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:53 Download gff for
BS28583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1126-RA | 7..1146 | 22..1161 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:49 Download gff for
BS28583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1126-RA | 22..1161 | 22..1161 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:49 Download gff for
BS28583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4816339..4816428 | 22..111 | 100 | -> | Plus |
| 3R | 4816487..4816635 | 112..260 | 100 | -> | Plus |
| 3R | 4816696..4816891 | 261..456 | 100 | -> | Plus |
| 3R | 4816952..4817189 | 457..694 | 100 | -> | Plus |
| 3R | 4817243..4817709 | 695..1161 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:53 Download gff for
BS28583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 642061..642150 | 22..111 | 100 | -> | Plus |
| arm_3R | 642209..642357 | 112..260 | 100 | -> | Plus |
| arm_3R | 642418..642613 | 261..456 | 100 | -> | Plus |
| arm_3R | 642674..642911 | 457..694 | 100 | -> | Plus |
| arm_3R | 642965..643431 | 695..1161 | 100 | | Plus |
BS28583.pep Sequence
Translation from 16 to 1161
> BS28583.pep
MLKSLAPIEGNQQPVLQLLWEDKEVKFDVPQLHKNLRSGERVLDYIYHIE
DSKGNPGDTGRLMVTNLRIIWHSLVHKKYNLSIGYARIGNTNTRVVHMHS
KARIASQALYILAVSNETRFEFLFTDVSGETSRRDQPIFASVFDVYHLYQ
RTYLYRDLKLRGAIVQAGQLVILPDEEVFSHVQGVWNLSSDQGNLGSFVV
TNIRLVWFADANETFNISLPYLQIESLRVRESKYGPALVIQTAETGGGYV
LGFRVDPAERLNELFKELSSLHTVYGEHPNFGIQYNANDARRRLEAASEE
AAQASQIKVDNFEELDERQEREINTKLNSYLAEGCLGKVPSQGERAPVYC
KELGFAMEPIGDGYKLQDLWNVMPTKMETME*
BS28583.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1126-PA | 381 | CG1126-PA | 1..381 | 1..381 | 1977 | 100 | Plus |
