Clone BS28586 Report

Search the DGRC for BS28586

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG34005-RB
Protein status:BS28586.pep: gold
Sequenced Size:590

Clone Sequence Records

BS28586.complete Sequence

590 bp assembled on 2012-03-26

GenBank Submission: KX803204

> BS28586.complete
GAAGTTATCAGTCGACATGAAAACAGCTATCATTCTGCTTATAGCCCTTG
GGGCATGTGCTGCTGAGCCTTCTCCCCGAACTCTAAACTCATTTTGCTCT
TACTTAGACGATGGAAAGGAAACTGTTTCGAGTCTGGGCAACACCAAGAA
GTGTTTTGCTCGTTACCTACCGGAACTGGAAAGTGAAGGGGCTACCTGGT
CGCAAGGATATAATGCCTGTCAGAAGATTACCATTAACGAGCGGCTGTCC
TTGCTAACGGATGCCACTGAGGCTCAGGAGGAGATTCGAGAGGCTGCCCT
GGGCATATCATCATTTATTGATCAGTGTTTGGTCCTGACGGAGGCCGTGG
ACTTTTTCAACTGCTTTGCCAAAATGGCTAAGTTACAGTTGGCGAATGTC
TACAGTATATCATTTAATGCCACCGAGCAGGCTTTAATCCTAAATAAGAA
ATTAAGTAGAATCGAATTGGAGCACTATCGCTGCACAAATCAAACCGAAC
AAAATTATGTCAAAGGAACCAATACAATCTTTCGATCTTTGGATCAGTGT
CTGCAGCAAAATGATACACACTGAAAGCTTTCTAGACCAT

BS28586.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG34005-RC 558 CG34005-PC 1..558 17..574 2790 100 Plus
CG34005-RB 558 CG34005-PB 1..558 17..574 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG34005-RC 633 CG34005-RC 27..585 16..574 2795 100 Plus
CG34005-RB 694 CG34005-RB 27..585 16..574 2795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18048222..18048547 52..377 1630 100 Plus
2R 25286936 2R 18048602..18048800 376..574 995 100 Plus
2R 25286936 2R 18048134..18048171 16..53 190 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:10:28 has no hits.

BS28586.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:36 Download gff for BS28586.complete
Subject Subject Range Query Range Percent Splice Strand
CG34005-RB 24..580 17..573 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:04 Download gff for BS28586.complete
Subject Subject Range Query Range Percent Splice Strand
CG34005-RB 28..584 17..573 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:34 Download gff for BS28586.complete
Subject Subject Range Query Range Percent Splice Strand
CG34005-RB 28..584 17..573 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:34 Download gff for BS28586.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18048223..18048546 53..376 100 -> Plus
2R 18048603..18048799 377..573 100   Plus
2R 18048135..18048170 17..52 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:04 Download gff for BS28586.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13935640..13935675 17..52 100 -> Plus
arm_2R 13935728..13936051 53..376 100 -> Plus
arm_2R 13936108..13936304 377..573 100   Plus

BS28586.pep Sequence

Translation from 16 to 573

> BS28586.pep
MKTAIILLIALGACAAEPSPRTLNSFCSYLDDGKETVSSLGNTKKCFARY
LPELESEGATWSQGYNACQKITINERLSLLTDATEAQEEIREAALGISSF
IDQCLVLTEAVDFFNCFAKMAKLQLANVYSISFNATEQALILNKKLSRIE
LEHYRCTNQTEQNYVKGTNTIFRSLDQCLQQNDTH*

BS28586.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG34005-PC 185 CG34005-PC 1..185 1..185 950 100 Plus
CG34005-PB 185 CG34005-PB 1..185 1..185 950 100 Plus
CG5767-PA 253 CG5767-PA 1..186 1..180 223 30.6 Plus
CG5770-PA 213 CG5770-PA 7..184 5..180 208 27.9 Plus
CG10911-PA 359 CG10911-PA 7..185 4..179 171 24.4 Plus