BS28587.complete Sequence
509 bp assembled on 2012-03-26
GenBank Submission: KX802459
> BS28587.complete
GAAGTTATCAGTCGACATGGCAACAGATGCAGCTGACAAGGATAAGCCGG
CGTACTCGTTCTTCTTTGGTTCGATGGGAGCGGCATCGGCCATCATCTTT
TCAGCCTTGGGAGCGGCATATGGAACGGCCAAGTCGGGCACTGGGATTGC
AGCCATGGCCGTAATGCGACCCGAATTGATCATGAAATCGATTATTCCCG
TTGTGATGGCTGGTATCATTGCGATCTATGGCCTGGTGGTCTCCGTTCTG
ATTGCCGGATCTCTGTCGGATTCGTATACCATTCGCAAGGGATACATCCA
CCTGGCAGCCGGATTATCGGTGGGTTTCGCCGGATTGGCGGCTGGATTTG
CCATTGGGATTGTGGGTGATGCCGGAGTGCGGGGCACTGCCCAGCAGCCA
CGCCTTTTTGTGGGCATGATCCTGATCCTGATCTTCGCCGAGGTACTGGG
TCTGTATGGGCTGATCGTCGCCATTTACCTGTACACCAAGTAAAAGCTTT
CTAGACCAT
BS28587.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-3-RB | 477 | CG32090-PB | 1..477 | 17..493 | 2385 | 100 | Plus |
Vha16-3-RA | 477 | CG32090-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Vha16-1-RB | 480 | CG3161-PB | 55..480 | 74..493 | 520 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:10:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-3-RB | 633 | CG32090-RB | 69..546 | 17..494 | 2390 | 100 | Plus |
Vha16-3-RA | 587 | CG32090-RA | 23..500 | 17..494 | 2390 | 100 | Plus |
Vha16-1-RB | 2798 | CG3161-RB | 145..571 | 74..494 | 525 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11473408..11473885 | 17..494 | 2390 | 100 | Plus |
3L | 28110227 | 3L | 11475145..11475468 | 167..490 | 375 | 74.4 | Plus |
2R | 25286936 | 2R | 6627469..6627668 | 494..295 | 355 | 78.5 | Minus |
2R | 25286936 | 2R | 6627768..6627925 | 258..101 | 295 | 79.1 | Minus |
2L | 23513712 | 2L | 10736392..10736579 | 486..299 | 280 | 76.6 | Minus |
2R | 25286936 | 2R | 16947727..16947868 | 477..336 | 215 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:10:32 has no hits.
BS28587.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:37 Download gff for
BS28587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-3-RB | 69..543 | 17..491 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:07 Download gff for
BS28587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-3-RA | 23..497 | 17..491 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:36 Download gff for
BS28587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-3-RA | 23..497 | 17..491 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:36 Download gff for
BS28587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11473408..11473882 | 17..491 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:07 Download gff for
BS28587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11466508..11466982 | 17..491 | 100 | | Plus |
BS28587.pep Sequence
Translation from 16 to 492
> BS28587.pep
MATDAADKDKPAYSFFFGSMGAASAIIFSALGAAYGTAKSGTGIAAMAVM
RPELIMKSIIPVVMAGIIAIYGLVVSVLIAGSLSDSYTIRKGYIHLAAGL
SVGFAGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI
VAIYLYTK*
BS28587.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-3-PB | 158 | CG32090-PB | 1..158 | 1..158 | 767 | 100 | Plus |
Vha16-3-PA | 158 | CG32090-PA | 1..158 | 1..158 | 767 | 100 | Plus |
Vha16-1-PB | 159 | CG3161-PB | 8..159 | 9..158 | 634 | 86.2 | Plus |
Vha16-1-PA | 159 | CG3161-PA | 8..159 | 9..158 | 634 | 86.2 | Plus |
Vha16-1-PD | 159 | CG3161-PD | 8..159 | 9..158 | 634 | 86.2 | Plus |