Clone BS28587 Report

Search the DGRC for BS28587

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptVha16-3-RA
Protein status:BS28587.pep: gold
Sequenced Size:509

Clone Sequence Records

BS28587.complete Sequence

509 bp assembled on 2012-03-26

GenBank Submission: KX802459

> BS28587.complete
GAAGTTATCAGTCGACATGGCAACAGATGCAGCTGACAAGGATAAGCCGG
CGTACTCGTTCTTCTTTGGTTCGATGGGAGCGGCATCGGCCATCATCTTT
TCAGCCTTGGGAGCGGCATATGGAACGGCCAAGTCGGGCACTGGGATTGC
AGCCATGGCCGTAATGCGACCCGAATTGATCATGAAATCGATTATTCCCG
TTGTGATGGCTGGTATCATTGCGATCTATGGCCTGGTGGTCTCCGTTCTG
ATTGCCGGATCTCTGTCGGATTCGTATACCATTCGCAAGGGATACATCCA
CCTGGCAGCCGGATTATCGGTGGGTTTCGCCGGATTGGCGGCTGGATTTG
CCATTGGGATTGTGGGTGATGCCGGAGTGCGGGGCACTGCCCAGCAGCCA
CGCCTTTTTGTGGGCATGATCCTGATCCTGATCTTCGCCGAGGTACTGGG
TCTGTATGGGCTGATCGTCGCCATTTACCTGTACACCAAGTAAAAGCTTT
CTAGACCAT

BS28587.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-3-RB 477 CG32090-PB 1..477 17..493 2385 100 Plus
Vha16-3-RA 477 CG32090-PA 1..477 17..493 2385 100 Plus
Vha16-1-RB 480 CG3161-PB 55..480 74..493 520 75.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-3-RB 633 CG32090-RB 69..546 17..494 2390 100 Plus
Vha16-3-RA 587 CG32090-RA 23..500 17..494 2390 100 Plus
Vha16-1-RB 2798 CG3161-RB 145..571 74..494 525 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11473408..11473885 17..494 2390 100 Plus
3L 28110227 3L 11475145..11475468 167..490 375 74.4 Plus
2R 25286936 2R 6627469..6627668 494..295 355 78.5 Minus
2R 25286936 2R 6627768..6627925 258..101 295 79.1 Minus
2L 23513712 2L 10736392..10736579 486..299 280 76.6 Minus
2R 25286936 2R 16947727..16947868 477..336 215 76.8 Minus
Blast to na_te.dros performed on 2014-11-28 04:10:32 has no hits.

BS28587.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:37 Download gff for BS28587.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-3-RB 69..543 17..491 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:07 Download gff for BS28587.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-3-RA 23..497 17..491 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:36 Download gff for BS28587.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-3-RA 23..497 17..491 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:36 Download gff for BS28587.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11473408..11473882 17..491 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:07 Download gff for BS28587.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11466508..11466982 17..491 100   Plus

BS28587.pep Sequence

Translation from 16 to 492

> BS28587.pep
MATDAADKDKPAYSFFFGSMGAASAIIFSALGAAYGTAKSGTGIAAMAVM
RPELIMKSIIPVVMAGIIAIYGLVVSVLIAGSLSDSYTIRKGYIHLAAGL
SVGFAGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI
VAIYLYTK*

BS28587.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-3-PB 158 CG32090-PB 1..158 1..158 767 100 Plus
Vha16-3-PA 158 CG32090-PA 1..158 1..158 767 100 Plus
Vha16-1-PB 159 CG3161-PB 8..159 9..158 634 86.2 Plus
Vha16-1-PA 159 CG3161-PA 8..159 9..158 634 86.2 Plus
Vha16-1-PD 159 CG3161-PD 8..159 9..158 634 86.2 Plus