Clone BS28588 Report

Search the DGRC for BS28588

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG34106-RA
Protein status:BS28588.pep: full length peptide match
Sequenced Size:401

Clone Sequence Records

BS28588.complete Sequence

401 bp assembled on 2012-03-26

GenBank Submission: KX801278

> BS28588.complete
GAAGTTATCAGTCGACATGTATGACCAGGTGATATTCACAGCTGAACTCT
TGCACCACAGAACTGTGGGCAGCCAAATCGAGGAGACACGGCGCCATTGG
GAGGAGCGGTGCTCTTGGTTTCCGGCTGCCCAAAGGAATATGGCATCAAG
GTGTTCAGAAATTTACAAGGAGAGTCTTGAAAAATACGGCAACGATTACT
ACGAGTTCTATGCCAATAGGAATCGTCTGAAGGAAGAACACAGAGTTAAT
ACCAAGTCTTATAAACGTCGGGAAAGAAGAAGGTCCCACAGGCCAATGGA
CCACTTAAAAGACTATAGGGTGTCACCAACTTCAAACGGGGAGTACGGAA
GTGTTCGGCCAATGCTTCTCCTTCAATGGCTTTAGAAGCTTTCTAGACCA
T

BS28588.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG34106-RB 369 CG34106-PB 1..369 17..385 1845 100 Plus
CG34106-RA 369 CG34106-PA 1..369 17..385 1845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIIa-RE 4457 CG12621-RE 2819..3189 17..387 1855 100 Plus
CG34106-RB 4457 CG34106-RB 2819..3189 17..387 1855 100 Plus
CG34106-RA 556 CG34106-RA 69..439 17..387 1855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17171480..17171850 17..387 1855 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:10:36 has no hits.

BS28588.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:38 Download gff for BS28588.complete
Subject Subject Range Query Range Percent Splice Strand
CG34106-RA 74..442 17..385 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:09 Download gff for BS28588.complete
Subject Subject Range Query Range Percent Splice Strand
CG34106-RA 69..437 17..385 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:38 Download gff for BS28588.complete
Subject Subject Range Query Range Percent Splice Strand
CG34106-RA 69..437 17..385 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:38 Download gff for BS28588.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17171480..17171848 17..385 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:09 Download gff for BS28588.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17171480..17171848 17..385 100   Plus

BS28588.pep Sequence

Translation from 16 to 384

> BS28588.pep
MYDQVIFTAELLHHRTVGSQIEETRRHWEERCSWFPAAQRNMASRCSEIY
KESLEKYGNDYYEFYANRNRLKEEHRVNTKSYKRRERRRSHRPMDHLKDY
RVSPTSNGEYGSVRPMLLLQWL*

BS28588.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG34106-PB 122 CG34106-PB 1..122 1..122 665 100 Plus
CG34106-PA 122 CG34106-PA 1..122 1..122 665 100 Plus
CG34169-PA 124 CG34169-PA 4..120 2..118 296 49.6 Plus
CG3611-PB 121 CG3611-PB 5..118 5..118 164 29.8 Plus
CG3611-PC 121 CG3611-PC 5..118 5..118 164 29.8 Plus