BS28596.complete Sequence
884 bp assembled on 2012-03-26
GenBank Submission: KX800713
> BS28596.complete
GAAGTTATCAGTCGACATGAGCACTCTTGATGCCAAAAAGATAGAAGAGG
CGGAGGCCTTGATAGGACAGACGGATAGTGCCGCGAATGAGTATGCCAAA
GCTGGTATGTATTTCAAGGCAGCAACCGCATATCGAATTGCCAAAAGTTT
CGATAAGCGCAAGGATTGTCTTTTGAAGGCCATCGACTGTTACGAAAACA
ACAAGTCATGGTTCCATGCAGCCAAATCCTACGAGCAGATTATCCTGCTT
GCCAAAGAAACGGACAAACTGTCCGAAGTGGAGGACTATGCCAATAGGGC
TTGCTGTCTCTACCAGCAACATGGTTCGCCGGAAGCAGCAGCTGCTGCTC
TCGATAAAGCCGCCAAAATGACGGAATCCAAGCATCCTGACTTGGCTTTG
GGATTTTACAAACGCGCCCTGGCAGTCGTCTTGATTGGGGACTCCACTCA
TCAGGCATCGGAATTTGCATCGAAGGTTTCCCGGATATTGGTCAGACTCA
AAAAATATGAAGAAGCCACGAAAGCCCTCAAAAAGGAAATAAGCCTAAAT
CTGCAGACAAAGTCTTACGGACAAGTTGGCCGTTTAGTAGTTGCTTTAAT
ACTGGTACAATTAACACTAGAGGATTACGTGGATGCCAAGAAGACCTTCA
AGAAATGGGGAAACCGTTGTGATCCCCAGGAGGTGAACACATTACAAAAC
CTACTCAAAGCTTTTGACGACGAGGATCCTGAGCTGGCCACCAAGATGCT
GGCATCTCCATTCATAAGACACATGGACGTGGAGTACGCACTTTTATCTA
AAGATGTGCCATTACCAAAAGGAAATCGTCAAATGACCAAAAATGCAGTC
GACAATGCCGCAAACTAAAAGCTTTCTAGACCAT
BS28596.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaSnap2-RA | 852 | CG6208-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
| gammaSnap1-RA | 909 | CG3988-PA | 120..813 | 109..802 | 725 | 73.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaSnap2-RA | 1002 | CG6208-RA | 27..879 | 17..869 | 4265 | 100 | Plus |
| gammaSnap1-RA | 1117 | CG3988-RA | 190..883 | 109..802 | 725 | 73.6 | Plus |
| sei-RC | 3197 | CG3182-RC | 154..375 | 733..512 | 255 | 74.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10120522..10121374 | 869..17 | 4265 | 100 | Minus |
| 2R | 25286936 | 2R | 24047562..24047852 | 802..512 | 390 | 75.6 | Minus |
| 2R | 25286936 | 2R | 24048335..24048454 | 238..119 | 255 | 80.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:10:21 has no hits.
BS28596.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:35 Download gff for
BS28596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6208-RA | 27..876 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:00 Download gff for
BS28596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6208-RA | 27..876 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:30 Download gff for
BS28596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaSnap2-RA | 27..876 | 17..866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:30 Download gff for
BS28596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10120525..10121374 | 17..866 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:00 Download gff for
BS28596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5946247..5947096 | 17..866 | 100 | | Minus |
BS28596.pep Sequence
Translation from 16 to 867
> BS28596.pep
MSTLDAKKIEEAEALIGQTDSAANEYAKAGMYFKAATAYRIAKSFDKRKD
CLLKAIDCYENNKSWFHAAKSYEQIILLAKETDKLSEVEDYANRACCLYQ
QHGSPEAAAAALDKAAKMTESKHPDLALGFYKRALAVVLIGDSTHQASEF
ASKVSRILVRLKKYEEATKALKKEISLNLQTKSYGQVGRLVVALILVQLT
LEDYVDAKKTFKKWGNRCDPQEVNTLQNLLKAFDDEDPELATKMLASPFI
RHMDVEYALLSKDVPLPKGNRQMTKNAVDNAAN*
BS28596.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaSnap2-PA | 283 | CG6208-PA | 1..283 | 1..283 | 1436 | 100 | Plus |
| gammaSnap1-PA | 302 | CG3988-PA | 1..290 | 1..282 | 991 | 67.3 | Plus |
