Clone BS28609 Report

Search the DGRC for BS28609

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:286
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG42814-RA
Protein status:BS28609.pep: full length peptide match
Sequenced Size:746

Clone Sequence Records

BS28609.complete Sequence

746 bp assembled on 2012-03-26

GenBank Submission: KX801053

> BS28609.complete
GAAGTTATCAGTCGACATGTTAAGACTACTGGGCAGTTTGGGTCGCTCCT
GCTGCTCGTCAGCCAAATCGGGCTTCAAGATCCAGCCAAGTTGTATTTCA
AAGATTTGGTTTGGTCCGATGCCCAAGGATTCGAATTGGATTAAGCCAGG
TCGACTTCACTACATCGAAAACGATGTGGAGAAACAGGTGGACATTATCA
AAACCATAGATGGTGTGGTCGTGATTCTGTACAACAAAGCGAGGGAAAAA
CTAATCTTCGTGCGTCAATTTAGGGGAGCAGTTTACCAGGGAATACATTC
GGCTGGATCACCAGACATGTCCAAGGGAGAAGCTGATCTGGAGCAGTTTC
CTCCCGAAGTAGGAGTCACTTTGGAACTTTGCGGTGGCGCCGTGGACAAG
GACAAAAGCCTGGCGGAGATCGCCAAGGAGGAAGTCCTCGAAGAGTGCGG
TTACGAGGTGCCCACCGAATCCCTGCAGCATGTCTACGACTATAGGTCGG
GTATTGGTACCTCAAGTAGTGCCATGTCTCTGTTCTACTGCGAGGTGTGT
GATGCTCAGAAGGTCTCGGCGGGCGGTGGCATTGGAGAAGAGCGAATCCA
GGTGCTAGAAATGTCCTTGGAGGAGTCGAGGCAGCTGGTCCAAACTGGGG
CGACCACCAATGGTGGACCATCCTGTTTGCTGGGTCTGCTTTGGTTCTTT
CAGCACAAGGCACCCAAGGTTTTAGCTTAGAAGCTTTCTAGACCAT

BS28609.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG42814-RA 714 CG42814-PA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG42814-RA 796 CG31063-RA 35..750 15..730 3580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27228719..27229434 730..15 3580 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:11:10 has no hits.

BS28609.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:43 Download gff for BS28609.complete
Subject Subject Range Query Range Percent Splice Strand
CG42814-RA 6..714 22..730 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:25 Download gff for BS28609.complete
Subject Subject Range Query Range Percent Splice Strand
CG42814-RA 42..750 22..730 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:51 Download gff for BS28609.complete
Subject Subject Range Query Range Percent Splice Strand
CG42814-RA 42..750 22..730 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:51 Download gff for BS28609.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27228719..27229427 22..730 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:25 Download gff for BS28609.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23054441..23055149 22..730 100   Minus

BS28609.pep Sequence

Translation from 16 to 729

> BS28609.pep
MLRLLGSLGRSCCSSAKSGFKIQPSCISKIWFGPMPKDSNWIKPGRLHYI
ENDVEKQVDIIKTIDGVVVILYNKAREKLIFVRQFRGAVYQGIHSAGSPD
MSKGEADLEQFPPEVGVTLELCGGAVDKDKSLAEIAKEEVLEECGYEVPT
ESLQHVYDYRSGIGTSSSAMSLFYCEVCDAQKVSAGGGIGEERIQVLEMS
LEESRQLVQTGATTNGGPSCLLGLLWFFQHKAPKVLA*

BS28609.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG42814-PA 237 CG31063-PA 1..237 1..237 1236 100 Plus
CG42813-PA 212 CG31063-PA 4..208 27..233 641 54.6 Plus
CG42813-PB 212 CG42813-PB 4..208 27..233 641 54.6 Plus