BS28665.complete Sequence
863 bp assembled on 2012-03-26
GenBank Submission: KX800508
> BS28665.complete
GAAGTTATCAGTCGACATGTATTTAACTCTGCTAAACGGTACTGGCTTCG
TTTTCAACGTGGATGATTACATGGAACTGCGGAGCAAACATCGCATAATG
GGTGCTCCAGTGGGCACAGCGAACACAAAAGGCTGGAGTCCTAATCAATC
CACTCTGCCCGTGGAGCTCAGTAAATTTGAAACCCAATTGCTTTTGGATG
AGAATATAGCAAAGTTAGTTGATAAATCCAAAGATCTAAAGGCTAAACCC
ACTGCCGAGAAACTTGAGGAGTGCAAGGCGGATTTTGAATCCCGGTTACT
GGGACAGGAGGAAGCATTGAAAACGGAGAAACTACGGGAAACTGAACGAT
ACATGGATAAGATTCTGACGGGAAAACGCAAGAAGTTGCTCAAGCAGGGC
AAAAATGAATTGGCTGCCGCTCTGACTGATAAGGATGTACTATTGGAGAT
GTCTGTGAATTTCAAATTCGATCGCCAAAATGCCTTGCTGGAGGTGCATT
GTGAACATCCCACGGATCACTCTGCGCAAATAGTTACCGGTCCCATTGTG
CACACCAATTCCCTGAAATACCGCGTTTTCAAAGATCTGTGGAGGCGCGG
AAAGTACGTGACTTCCGGCGATGCATTTGGAGCGGACTTTCTGGTTTACC
CCGGCGATCCCATGATCTACCACGCCTCCCACATTGTAATTTTGCACGAG
CAACCTGTAATTAAGCCCCTGGAACTGATAGCAAAAGTTCGTCTATCGGT
AATTGTCAACAAAAGCTGCGTTTTCGCCTACGAGATGGAAAATAATGAGG
AAGAAATACATTACCAAACGGTCGCATGGTGCAATCTAGGAAAATGAAAG
CTTTCTAGACCAT
BS28665.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33260-RC | 831 | CG33260-PC | 1..831 | 17..847 | 4140 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:11:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33260-RC | 902 | CG33260-RC | 13..843 | 17..847 | 4140 | 99.9 | Plus |
| Trl-RF | 2613 | CG33261-RF | 1..409 | 439..847 | 2030 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14760579..14760904 | 847..522 | 1615 | 99.7 | Minus |
| 3L | 28110227 | 3L | 14761292..14761552 | 413..153 | 1305 | 100 | Minus |
| 3L | 28110227 | 3L | 14760967..14761075 | 521..413 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 14761640..14761727 | 152..65 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 14761780..14761832 | 69..17 | 250 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:11:14 has no hits.
BS28665.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:44 Download gff for
BS28665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33260-RC | 13..836 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:27 Download gff for
BS28665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33260-RC | 13..836 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:54 Download gff for
BS28665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33260-RC | 13..836 | 17..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:54 Download gff for
BS28665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14760586..14760904 | 522..840 | 99 | <- | Minus |
| 3L | 14760967..14761074 | 414..521 | 100 | <- | Minus |
| 3L | 14761292..14761552 | 153..413 | 100 | <- | Minus |
| 3L | 14761640..14761726 | 66..152 | 100 | <- | Minus |
| 3L | 14761784..14761832 | 17..65 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:27 Download gff for
BS28665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14754740..14754826 | 66..152 | 100 | <- | Minus |
| arm_3L | 14754884..14754932 | 17..65 | 100 | | Minus |
| arm_3L | 14753686..14754004 | 522..840 | 99 | <- | Minus |
| arm_3L | 14754067..14754174 | 414..521 | 100 | <- | Minus |
| arm_3L | 14754392..14754652 | 153..413 | 100 | <- | Minus |
BS28665.pep Sequence
Translation from 16 to 846
> BS28665.pep
MYLTLLNGTGFVFNVDDYMELRSKHRIMGAPVGTANTKGWSPNQSTLPVE
LSKFETQLLLDENIAKLVDKSKDLKAKPTAEKLEECKADFESRLLGQEEA
LKTEKLRETERYMDKILTGKRKKLLKQGKNELAAALTDKDVLLEMSVNFK
FDRQNALLEVHCEHPTDHSAQIVTGPIVHTNSLKYRVFKDLWRRGKYVTS
GDAFGADFLVYPGDPMIYHASHIVILHEQPVIKPLELIAKVRLSVIVNKS
CVFAYEMENNEEEIHYQTVAWCNLGK*
BS28665.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33260-PC | 276 | CG33260-PC | 1..276 | 1..276 | 1435 | 100 | Plus |
