BS28678.complete Sequence
1052 bp assembled on 2012-03-26
GenBank Submission: KX800427
> BS28678.complete
GAAGTTATCAGTCGACATGCGAGGACTTCCTAGTTCTTTGGTCCTTCAAG
CCTTGTTGCTGGCCGTGATGGTTCATCAGAGCATTCAAACGCGTTACTTA
AACGCCACCGACGATATCTGTCGACTTTTCAAGGATGGTACCCAACTCTT
GAAGCCCGGATCCTGCAGCGAATCGATTATTTGCCAAAACTTTGAATCAA
CACCAGGTATAACGTGCTCGGGCTCTAAACCGTACTACAGTAAGTCCAAG
GGTTCATGCCAAGCGTCCGCGGATACTTACTGCGATACAAGCAAAATATG
CAAGGGATCTGGAACGGGCTATATTGGTGATACCATAAATTGTGCCAACT
GGTATTACTGTGATGCGGATGCGTTGTTGGGCAAAGGAACATGCAACCTG
GGAATGTACTTCGATCAAGTAAGCAAGAGTTGCGTTTATTCGGAGGACAC
AGTTTGTGCCGCCAAATATGAGATCTGCGACGTTGCGCCCGTAGGCACAC
CATTCCGCGATGATGCCAACTGCCACAAGTACTATACCTGCAGCAGTAAG
AGCCTGGTGGAAAATACATGCGAAAATGGACTGTATTACAACGTGGCCAC
CGGAACTTGTGTGAGGAAAAAGGACGTTATCTGCGAGAACCATCCGTTGC
CAGATGAGGTGTGTGGCAACAAGAAGCTGGCGGTGCGCAACAAATTCGTT
TCAGATATGGCCACATGTCGCGGATATTACTACTGCCGCGATTTGGGATC
CGGTATCCCCGATACCGATCCCATATACCAGCAGTGTGACGAGAACAACT
TCTTCAACCAGGAGCGACAGGCGTGCATGCCGCGCGAGAGCCAGAAATGC
GATTACGATAGATGTGATGGGCGCAAGGATGGCTTCGAAGTGGCCGAAAT
CGATGGATGCCACCACTACATCGAATGCGTCGATGGCCGGGAAACGACTC
CCATAAGCTGTGAGGATAAGTATTTCGACGTTGTCACGCAAAACTGCAGC
TCAACTCACTTAGTTTACGGAGCTTGTTCCTCTTAAAAGCTTTCTAGACC
AT
BS28678.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5883-RA | 1020 | CG5883-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:11:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5883-RA | 1146 | CG5883-RA | 51..1070 | 17..1036 | 5100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:11:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11943716..11944730 | 1036..22 | 5075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:11:17 has no hits.
BS28678.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:45 Download gff for
BS28678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5883-RA | 45..1062 | 17..1034 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:29 Download gff for
BS28678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5883-RA | 51..1068 | 17..1034 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:55 Download gff for
BS28678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5883-RA | 51..1068 | 17..1034 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:55 Download gff for
BS28678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11943718..11944732 | 17..1034 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:29 Download gff for
BS28678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11936818..11937832 | 17..1034 | 99 | | Minus |
BS28678.pep Sequence
Translation from 16 to 1035
> BS28678.pep
MRGLPSSLVLQALLLAVMVHQSIQTRYLNATDDICRLFKDGTQLLKPGSC
SESIICQNFESTPGITCSGSKPYYSKSKGSCQASADTYCDTSKICKGSGT
GYIGDTINCANWYYCDADALLGKGTCNLGMYFDQVSKSCVYSEDTVCAAK
YEICDVAPVGTPFRDDANCHKYYTCSSKSLVENTCENGLYYNVATGTCVR
KKDVICENHPLPDEVCGNKKLAVRNKFVSDMATCRGYYYCRDLGSGIPDT
DPIYQQCDENNFFNQERQACMPRESQKCDYDRCDGRKDGFEVAEIDGCHH
YIECVDGRETTPISCEDKYFDVVTQNCSSTHLVYGACSS*
BS28678.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5883-PA | 339 | CG5883-PA | 1..339 | 1..339 | 1884 | 100 | Plus |
| CG17145-PB | 334 | CG17145-PB | 27..334 | 32..339 | 572 | 35.8 | Plus |
| CG17145-PA | 334 | CG17145-PA | 27..334 | 32..339 | 572 | 35.8 | Plus |
| CG17147-PB | 337 | CG17147-PB | 1..332 | 1..337 | 510 | 34 | Plus |
| CG6996-PC | 364 | CG6996-PC | 28..331 | 34..337 | 425 | 32.4 | Plus |
| CG17145-PB | 334 | CG17145-PB | 20..199 | 144..333 | 172 | 25.3 | Plus |
| CG17145-PA | 334 | CG17145-PA | 20..199 | 144..333 | 172 | 25.3 | Plus |
