BS28706.complete Sequence
1946 bp assembled on 2012-04-06
GenBank Submission: KX801505
> BS28706.complete
GAAGTTATCAGTCGACATGATCAGGGGAATAGAGGAGCACGTACATATAT
ATGTCCGCGCCCACTTCCGAGCCTCGCTGGAGACCTCGGAGTACGAGAAC
ACCTCGAACCTATTCCATGTGACGGCCGCCGAGCAGACCGCCGCTCTTCT
GGCCCGCTGCGAAATCCTGCTGGCTGCAGCCAGTTCTGCATCGGGATCGG
GATCGGGACTGGAACTGGGATCAGGGCTGGGATGCGCAGACGAGCAGGCG
GCAGCTAACCATCGTTCCAGCCTGGTCGACTGTGTCGATAGCAAGGTGGG
CGCGGAGACCGGTCCCAGCGGTTATCTGGAGATGCTTGCCTCCCCGTCAC
CCTCGAAAAGCTCACTGTCCGCCTCGCGGGAGTACATTGATTTGGGCAGC
AGCGGATCCCTGGATCGTTGCTCCGTCAATCAACCGGTTCCGGCAGCGAA
GGACAAGGAGCCACATCAGCAGCTCTACGAGATTTGCCAGGGCCAGGGAG
CGGGCCAGGACGAGGATGAGGCGCAACAGGCGATCACCTTTACCCACGAG
GTGTTCATTGACTGCCCGTATGCAGATCTGCCCGCTGGCCACTTGTCCCT
GCAGAGGTCAACAAAGTACGGACAGCTGCAGAGGATTGTGCCCAAGCGGC
TGTTCTTCGACCAGACCCGCAAGTGCTACTGTGGCATCCTCAACGATTGG
ATGCTGTGCTATGCCGACGGCCCGACCGCCTGTCGACCCAGCAGCACGCT
CTACTTGAAGAGCTCCTCCATCGAGATTGAACACTTCGGAGAGGGGAAGC
GGCGCGACATCTGCTTCCAGATCACAACAGACGACCCCAACAAGAAGTTC
GTGTACCAGGCCAACAACGAAGTCGATGCCAAAGAGTGGATACACGCCAT
TGAGGCGGCCATCCGCGGAGATGCTGGTGCTCATTCAGCGTTAAAGACTC
CACCGCCCCGGAAACTGCCCACGCCGCCGGTCCAAAAGAAATCCACCTAC
ACAGCAGCGGATATCATCTACGAGGAGCCCTCGCCCGTGTATGGTCTCAT
AGACTCCTCCTCCATGGTGCTCCCTAAGCTGCCGGAGAAAAGCAACAGCC
CAAGCGCCCTCGCCCGACGTTTCGAGTACGATGTGCCCAAATGCCCGGCA
CAGCCGCTGCAGGACACCTCCTCCAGGGTGGCATCTGTAAGTGGGGAGCT
GGAATCCCTGGGACTACTCAACGAGGGAGATATTAAGGTGCAACCGCAGC
CTTCCAGTTTGCACGGAAGCATATCGCTGGACTTCCAGGCCAGGGTGAAA
ACAGTGCACAGTGAGCTCTCCACCCAGTTATCAGCGGCCGGTCCCAGTCC
GGATCGTCTGAAAAAGGCAGCGAAAAAGAGCTATTCGAATGGTAGTGAAC
CGGAGATGCTCTCTCCCCTGACCAGCCCCGTCCAAACGCCCACCAAGGAT
CAGAAGAAGCAGCGCAAGTCAACCACCTCACCGCAATCCAGTCCGGTCAG
CAAGGACTGCGACAAGCTGGCACGAAACTGGTTCCTCAGTCGCCTTAACA
AGAGCACCGGATTGAAGGCGACCAACACGGGCAGTGCATCACCAACCAAC
GCCAAGTGCAAGCAGAGCGAGAAGGAGAACCTGCTGACGGAAGCGGAGCT
GGGCGAGGGCTATGATGCAAGTCCTGGTGATCGGTATCACGGCCTGCCGG
GCAGCCCGCCCACGTCGCCGTGTCTGAAGGCGGAGGCCAAGAGCAAGGTG
AACATGATTATCAACCAGTTTGAGAGTAGCGGTCACCTGTCCACCATGTT
CAGCGTGGAAGCTTTGGCCGCCAATGCACTCGCCTCGCTGACATCCTTCT
GCGAAAGTGATGGTTGCAACAACTACGAGCCAATCATGCCCCTGGCCACG
ACTCCCAGCAGCTTTCTCAAGAAGGTGTAGAAGCTTTCTAGACCAT
BS28706.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blow-RB | 1914 | CG1363-PB | 1..1914 | 17..1930 | 9570 | 100 | Plus |
| blow-RD | 1935 | CG1363-PD | 56..1935 | 51..1930 | 9400 | 100 | Plus |
| blow-RA | 1935 | CG1363-PA | 56..1935 | 51..1930 | 9400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:27:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blow-RB | 2270 | CG1363-RB | 54..1969 | 16..1931 | 9580 | 100 | Plus |
| blow-RD | 2612 | CG1363-RD | 431..2311 | 51..1931 | 9405 | 100 | Plus |
| blow-RA | 2632 | CG1363-RA | 451..2331 | 51..1931 | 9405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7580789..7582354 | 1931..366 | 7830 | 100 | Minus |
| 2R | 25286936 | 2R | 7582614..7582928 | 365..51 | 1575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:26:57 has no hits.
BS28706.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 13:47:02 Download gff for
BS28706.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blow-RB | 55..1968 | 17..1930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:12 Download gff for
BS28706.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blow-RB | 55..1968 | 17..1930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:02 Download gff for
BS28706.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blow-RB | 55..1968 | 17..1930 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:02 Download gff for
BS28706.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7580790..7582354 | 366..1930 | 100 | <- | Minus |
| 2R | 7582614..7582928 | 51..365 | 100 | <- | Minus |
| 2R | 7584135..7584168 | 17..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:12 Download gff for
BS28706.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3468295..3469859 | 366..1930 | 100 | <- | Minus |
| arm_2R | 3470119..3470433 | 51..365 | 100 | <- | Minus |
| arm_2R | 3471640..3471673 | 17..50 | 100 | | Minus |
BS28706.pep Sequence
Translation from 16 to 1929
> BS28706.pep
MIRGIEEHVHIYVRAHFRASLETSEYENTSNLFHVTAAEQTAALLARCEI
LLAAASSASGSGSGLELGSGLGCADEQAAANHRSSLVDCVDSKVGAETGP
SGYLEMLASPSPSKSSLSASREYIDLGSSGSLDRCSVNQPVPAAKDKEPH
QQLYEICQGQGAGQDEDEAQQAITFTHEVFIDCPYADLPAGHLSLQRSTK
YGQLQRIVPKRLFFDQTRKCYCGILNDWMLCYADGPTACRPSSTLYLKSS
SIEIEHFGEGKRRDICFQITTDDPNKKFVYQANNEVDAKEWIHAIEAAIR
GDAGAHSALKTPPPRKLPTPPVQKKSTYTAADIIYEEPSPVYGLIDSSSM
VLPKLPEKSNSPSALARRFEYDVPKCPAQPLQDTSSRVASVSGELESLGL
LNEGDIKVQPQPSSLHGSISLDFQARVKTVHSELSTQLSAAGPSPDRLKK
AAKKSYSNGSEPEMLSPLTSPVQTPTKDQKKQRKSTTSPQSSPVSKDCDK
LARNWFLSRLNKSTGLKATNTGSASPTNAKCKQSEKENLLTEAELGEGYD
ASPGDRYHGLPGSPPTSPCLKAEAKSKVNMIINQFESSGHLSTMFSVEAL
AANALASLTSFCESDGCNNYEPIMPLATTPSSFLKKV*
BS28706.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blow-PB | 637 | CG1363-PB | 1..637 | 1..637 | 3301 | 100 | Plus |
| blow-PD | 644 | CG1363-PD | 20..644 | 13..637 | 3236 | 100 | Plus |
| blow-PA | 644 | CG1363-PA | 20..644 | 13..637 | 3236 | 100 | Plus |
