BS28707.complete Sequence
3035 bp assembled on 2012-04-11
GenBank Submission: KX805077
> BS28707.complete
GAAGTTATCAGTCGACATGCATGATCCAGGGAGCAGCAGCCGCCTATCAG
GAGCCGCATCCGCAGCAGCAGGGACCGCGTCAGCTGGAGCTATAGCTGCA
GCCGTAGGAGCAGCTGCTGCCTCGCGGCACGACAATAAGACACAGCTTGG
CAACGGCAGCCGCAGTAAGATGTGGATATGCATCAAATGTTCCTATGCCT
ACAACCGACTCTGGCTCCAGACTTGCGAGATGTGCGAGGCCAAAGCCGAA
CAGCAGCAACAGCAGTTGCAGCTGCAACAGCAGCAGCAGCAGCAGCAGCA
GCACCACCACCACCACTTGCAGCAGCAACAGGCAGAAGCACCCCGCGACG
AGCCATGGACCTGCAAGAAGTGCACCCTGGTTAACTACTCGACAGCAATG
GCCTGCGTGGTGTGCGGCGGCTCCAAGCTGAAAAGCATCTCTTCCATCGA
GGACATGACGTTGCGAAAGGGCGAGTTCTGGACCTGCAGCCACTGTACGC
TCAAGAACTCGCTGCACTCGCCGGTCTGCAGTGCCTGCAAGTCCCACCGC
CAGCCGCAGCTCTCGATGGCCATGGAGGCGGTACGGGAGCGACCGGATGG
TCAGTCGTACGAGGAGCAGGATGCTGCAGCCGTCGGGGGCGGAGGAGGCA
GTGCCCACCAATCGGGCGCCAATGAGGTCAAGGCGCCTACAGCCTTGAAC
CTACCGCTAACTTCGGTGGCGTTGCCCATGCCCATGCTGCAGCTTCCAAC
GTCAACAGCGGCTGGTCTGCGCGGCTCACGCAGTCCCTCGCCCAGGATGC
AGCTGCTGCCATCACTCCAGCAGCAGAGGAACTCCAGCTCATCGGGCGCT
ATACCTAAACGTCACAGCACCGGCGGCTCCATTGTGCCACGGAACATTTC
CATCGCTGGTCTGGCCAATTACAATTTGCAGCAGGGCCAGGGAGTCGGCT
CCGCATCGGTAGTGTCTGCTTCTGGAGCTGGATCTGGAGCTGGAGCTGTC
GGAGCCAGTACCAGCACAAAGAAGTGGCAGTGTCCCGCGTGCACGTACGA
TAACTGTGCCGCTTCCGTCGTTTGTGACATCTGCTCGAGTCCGCGCGGCC
TGGCGAGCGCAGTTTTGGGCGAGGCGTTGGGCAGAAAGTCCGTTCGAGTT
GCCCTCACACCGGCAGATATTCGGCAGGAGAGCAAGCTGATGGAGAACCT
TCGCCAGCTGGAGGAGACCGAAGCGTTGACCAAGTGGCAAAACATCATAC
AGTACTGTCGCGACAATAGCGAGCTTTTCGTGGACGATTCGTTTCCGCCG
GCGCCGAAGAGTCTGTACTACAATCCGGCGAGCGGAGCAGGCGAGGGAAA
TCCTGTGGTGCAGTGGCGACGGCCGCACGAGATTAACTGCGACGGCGGAG
CGTATCCACCGTGGGCTGTGTTCCGCACCCCGCTGCCCTCGGACATCTGC
CAGGGCGTCTTGGGCAACTGCTGGCTACTCAGTGCGCTGGCGGTGCTGGC
GGAGCGCGAAGATCTGGTCAAGGAGGTGCTGGTCACGAAGGAGATATGTG
GCCAGGGCGCATACCAGGTGCGCCTCTGCAAAGACGGCAAGTGGACGACG
GTGCTGGTGGATGATCTGCTGCCATGCGACAAGCGTGGCCATCTGGTTTA
TTCGCAGGCCAAGCGCAAGCAGCTATGGGTGCCGCTGATCGAGAAGGCTG
TGGCCAAGATCCACGGCTGCTACGAGGCGCTGGTCTCGGGCCGGGCGATC
GAGGGACTGGCCACGCTGACAGGAGCGCCTTGCGAGAGCATTCCACTACA
GGCCAGTAGCTTGCCCATGCCCAGCGAGGACGAACTGGACAAGGACCTGA
TATGGGCCCAGCTGCTGAGCTCTCGATGCGTACGATTCCTCATGGGCGCC
AGCTGTGGCGGTGGCAACATGAAGGTGGACGAGGAGGAGTACCAGCAGAA
GGGGCTGCGCCCGCGACACGCCTACTCGGTGCTGGACGTGAAGGACATCC
AGGGACATCGCCTGCTCAAGCTACGCAATCCGTGGGGTCACTATTCGTGG
CGTGGCGATTGGTCGGATGACTCCTCGCTGTGGACGGACGATCTTCGGGA
TGCTCTGATGCCGCACGGCGCCAGCGAGGGCGTCTTCTGGATCTCGTTCG
AGGATGTGCTTAACTACTTCGACTGCATCGATATCTGCAAGGTGCGCTCC
GGCTGGAACGAGGTGCGTCTGCAGGGGACATTGCAGCCCCTGTGCTCCAT
CTCCTGTGTGCTGCTCACCGTGCTGGAGCCGACGGAGGCGGAGTTTACCC
TATTCCAGGAGGGGCAGCGCAACTCGGAGAAGTCGCAGCGATCGCAGCTG
GACCTGTGCGTTGTGATATTCCGCACCCGGTCTCCGGCGGCGCCGGAAAT
CGGTCGATTAGTGGAGCACAGCAAGCGTCAGGTGCGAGGCTTTGTGGGAT
GCCACAAGATGCTGGAGCGGGACATTTACCTGCTTGTGTGTCTGGCCTTC
AACCATTGGCACACGGGCATCGAGGATCCCCACCAGTATCCTCAATGCAT
CCTAGCGATACACAGCTCCAAGCGTCTGCTGGTGGAGCAGATAAGTCCCT
CGCCGCATCTCCTGGCCGACGCTATCATTAGCCTGACCCTAACCAAGGGA
CAGCGGCACGAGGGGCGCGAGGGGATGACCGCCTACTATCTGACCAAGGG
CTGGGCGGGTCTGGTTGTGATGGTGGAAAATAGACATGAGAATAAGTGGA
TCCATGTGAAATGTGATTGCCAGGAGAGCTACAATGTGGTGTCGACACGC
GGCGAACTCAAGACAGTGGACTCTGTGCCCCCGCTGCAGAGACAAGTAAT
CATCGTTCTCACCCAACTAGAGGGCAGTGGCGGCTTCAGCATCGCCCACC
GGCTGACCCATCGTCTGGCGAATTCCCGCGGCCTGCACGACTGGGGGCCA
CCCGGCGCCACCCACTGCCCGCCCATCGAGAATGTCCATGGACTGCACGC
TCCGCGGCTAATCACCTAGAAGCTTTCTAGACCAT
BS28707.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:50:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sol-RF | 4548 | CG1391-PF | 1546..4548 | 17..3019 | 15015 | 100 | Plus |
| sol-RB | 4785 | CG1391-PB | 1783..4785 | 17..3019 | 15015 | 100 | Plus |
| sol-RE | 4782 | CG1391-PE | 1783..4782 | 17..3019 | 14935 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:50:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sol-RF | 5153 | CG1391-RF | 1673..4677 | 17..3021 | 15025 | 100 | Plus |
| sol-RB | 5592 | CG1391-RB | 2112..5116 | 17..3021 | 15025 | 100 | Plus |
| sol-RA | 4990 | CG1391-RA | 1510..4514 | 17..3021 | 15025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:50:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21354477..21356072 | 333..1928 | 7980 | 100 | Plus |
| X | 23542271 | X | 21356138..21356650 | 1922..2434 | 2565 | 100 | Plus |
| X | 23542271 | X | 21354095..21354413 | 17..335 | 1595 | 100 | Plus |
| X | 23542271 | X | 21356705..21356974 | 2430..2699 | 1350 | 100 | Plus |
| X | 23542271 | X | 21357255..21357436 | 2840..3021 | 910 | 100 | Plus |
| X | 23542271 | X | 21357043..21357187 | 2697..2841 | 725 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:50:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 629..712 | 135..52 | 186 | 69 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 660..734 | 116..42 | 132 | 64 | Minus |
BS28707.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 16:52:52 Download gff for
BS28707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sol-RD | 1697..4699 | 17..3019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:29 Download gff for
BS28707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sol-RC | 1510..4512 | 17..3019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:38:15 Download gff for
BS28707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sol-RA | 1510..4512 | 17..3019 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:38:15 Download gff for
BS28707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21354095..21354413 | 17..335 | 100 | -> | Plus |
| X | 21354480..21356068 | 336..1924 | 100 | -> | Plus |
| X | 21356141..21356647 | 1925..2431 | 100 | -> | Plus |
| X | 21356707..21356973 | 2432..2698 | 100 | -> | Plus |
| X | 21357045..21357187 | 2699..2841 | 100 | -> | Plus |
| X | 21357257..21357434 | 2842..3019 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:29 Download gff for
BS28707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21228284..21228461 | 2842..3019 | 100 | | Plus |
| arm_X | 21227168..21227674 | 1925..2431 | 100 | -> | Plus |
| arm_X | 21227734..21228000 | 2432..2698 | 100 | -> | Plus |
| arm_X | 21225122..21225440 | 17..335 | 100 | -> | Plus |
| arm_X | 21225507..21227095 | 336..1924 | 100 | -> | Plus |
| arm_X | 21228072..21228214 | 2699..2841 | 100 | -> | Plus |
BS28707.pep Sequence
Translation from 16 to 3018
> BS28707.pep
MHDPGSSSRLSGAASAAAGTASAGAIAAAVGAAAASRHDNKTQLGNGSRS
KMWICIKCSYAYNRLWLQTCEMCEAKAEQQQQQLQLQQQQQQQQQHHHHH
LQQQQAEAPRDEPWTCKKCTLVNYSTAMACVVCGGSKLKSISSIEDMTLR
KGEFWTCSHCTLKNSLHSPVCSACKSHRQPQLSMAMEAVRERPDGQSYEE
QDAAAVGGGGGSAHQSGANEVKAPTALNLPLTSVALPMPMLQLPTSTAAG
LRGSRSPSPRMQLLPSLQQQRNSSSSGAIPKRHSTGGSIVPRNISIAGLA
NYNLQQGQGVGSASVVSASGAGSGAGAVGASTSTKKWQCPACTYDNCAAS
VVCDICSSPRGLASAVLGEALGRKSVRVALTPADIRQESKLMENLRQLEE
TEALTKWQNIIQYCRDNSELFVDDSFPPAPKSLYYNPASGAGEGNPVVQW
RRPHEINCDGGAYPPWAVFRTPLPSDICQGVLGNCWLLSALAVLAEREDL
VKEVLVTKEICGQGAYQVRLCKDGKWTTVLVDDLLPCDKRGHLVYSQAKR
KQLWVPLIEKAVAKIHGCYEALVSGRAIEGLATLTGAPCESIPLQASSLP
MPSEDELDKDLIWAQLLSSRCVRFLMGASCGGGNMKVDEEEYQQKGLRPR
HAYSVLDVKDIQGHRLLKLRNPWGHYSWRGDWSDDSSLWTDDLRDALMPH
GASEGVFWISFEDVLNYFDCIDICKVRSGWNEVRLQGTLQPLCSISCVLL
TVLEPTEAEFTLFQEGQRNSEKSQRSQLDLCVVIFRTRSPAAPEIGRLVE
HSKRQVRGFVGCHKMLERDIYLLVCLAFNHWHTGIEDPHQYPQCILAIHS
SKRLLVEQISPSPHLLADAIISLTLTKGQRHEGREGMTAYYLTKGWAGLV
VMVENRHENKWIHVKCDCQESYNVVSTRGELKTVDSVPPLQRQVIIVLTQ
LEGSGGFSIAHRLTHRLANSRGLHDWGPPGATHCPPIENVHGLHAPRLIT
*
BS28707.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:21:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sol-PF | 1515 | CG1391-PF | 516..1515 | 1..1000 | 5323 | 100 | Plus |
| sol-PB | 1594 | CG1391-PB | 595..1594 | 1..1000 | 5323 | 100 | Plus |
| sol-PE | 1593 | CG1391-PE | 595..1593 | 1..1000 | 5306 | 99.9 | Plus |
| CalpA-PA | 565 | CG7563-PA | 25..386 | 361..726 | 363 | 30.1 | Plus |
| CalpA-PC | 828 | CG7563-PC | 25..386 | 361..726 | 363 | 30.1 | Plus |
