BS28712.complete Sequence
3071 bp assembled on 2012-04-06
GenBank Submission: KX805588
> BS28712.complete
GAAGTTATCAGTCGACATGATTCCATCAGATATGGACCTAATTGAATCAA
CCGCGGAGCAGCCGGACAAACTCTACAACATCAACAGAATCCGAGCGTTT
AAAGATGTTCCCTTCCTGATAAGGCGCACGGAGTCCAAGGACACGATCGT
GTCATACGCCGATGCTGCAGATGAGATTCAAGTTTTGATGAATTTTCTGC
GAAAGAACGGGGTCCCAGATGAGGCAGGAATTGCTCTACGAGTCACGGAG
CACACGCCGGCCTCTTCTCTTATGATTTTGGCGATCCTCAACAACAAGTG
CCACTTTTTTCCCACGGATAAGATGATGCTGTCACAGGATCTATACTCAC
AGATGAGCACGGCCGGAGTGGACTACCTCGTGGCCAACAAACATTTAACC
GTTGCACCCTTGTACTTCACATTTCTGGGGAGCATCTTGGTGTTTAAGGA
GGACTGTAGGCTATACAGGGTAAAGTTGAAATCCGCTGATGAGACTGTAC
AATCCAAAAAGCCGTTACCAGCCAATATGTGCTACACAATCTCCACGACG
GGCACTACGGGTAAGCCAAAGCTCATACATGTGCCCTATGAATGCATAGC
GCCCAACATAGTGGGGCTCAGCCAAAAGTTAAACGTCTCCATGGCCGACA
TCATTTACCTTGGCACACCAATTACCTTCGATCCCTTCGTGGTGGAGTTC
TTCCTAGCTCTTCAAAATGGTGCTACTTTACTGACCAGTCGTCACTCCAT
GAGGGACTCGCCAAGCAAGGTGCTAAGTGCCCTCTTCCCCGACAACCTGG
CCACACCGGGAATCACTGTTCTGCAGATGACTCCTTCGCTGTTTCGGCAA
TTTGGTGCATCTTCCATCAAAGATCGAGTGCTCAGCGGGTCCAGTTCATT
GAGAGTACTGCTCCTTGGTGGCGAACCATTTCCCAGCAATGTCGAGCTTG
TTACTTGGATGCATCCAAGTGTCCTGATGCAGAAGCACATATGCAACATA
TATGGAATCACGGAAATATCCTGTTGGAGCCTACTGCACATCGTTCAGTC
ATTACAATCTCCTGTGCCTTTGGGCACGCCTATCGAAGAGGACACGGTTC
TGCGGATTGAATCCGAAGACAATGAAACCTCACAGCAAGGAGAGCTGTTT
CTGGGTAGTGTCAAGCGGCGTTGCTATATCCCAGAAGTTGATGACCAGGC
GAATGCTTCACAAGACGATTCAGGTATTTGTTTCAGGGCGACAGGAGATT
TGGTAACACGACAGCAGGATGGCACATTGTTCTATAGTGAGAGATCGAAC
GATGTGGTAAAGCGAGCTGGTAATCGCATTAGCTTGGGTTTAATCACCAG
AAAAATTCAAAAATGTCTGCCTAGCTCGGAACTGACTACTTGCCTATGGC
TCGAAGATTTGCAGAAACTCATTTGCTGCATTCGAACCCTAGAGTCGAAG
ACTAGAGTTCAGCAGCGGGTCCAAACCTTTGATATACTTTCCAAGGTATC
GATTGCCGAGCAGCCAGATAGATTTGTCTATCTGCAACACTTTCCCTGCA
ACGTACACGGCAAGCTAGACAAGCAACAGCTTCTTAAAATGTGCATTCCC
CTTGCACAACCAGCTCAGCAGATATTAAAGAGCTATCTACACGATAGGCT
AGAATGTGTGGAAGAGCCTGATGATAGCGCTTCGAAAAAGCAGCGACTTG
ATGACGCCGCTCCCTGTGGCTATGATTTGAGTTTTCGCCAGGCGGGTGGC
ACATCATTCCATGCCATCACCATTTGCCGAGAGATAGGTTTACAAATGTG
CATCGATGATGAGCAACGCCACTTGTTCGAAATGCTACTGGATGAGAACA
TTCCGTTGCGCACAGTGCTAAGATTCTTGGACACAGCCAAGTTGGTGGCC
AACAATATTAAGCGAAAGAATGTTGAGACAGCGGTAGTTGTCTCAGCCTG
CCAAAGTGGCTTGATTATTAAACGTATCGAACAGCCGGTCCTCAAGCTTC
AGATCTACTGGAAGGTCAACTTCGAGAAGTGCATAGACTCCCCAGTGACC
GAATACGAGGGACGCTTCATTTGCGTGGGCGCACATTCGAAAATCCTCCG
GACGCTTAATCCCCAGACGGGCAGCGAATACAGTGTAGTGAAACTTCCCG
AACGTATCGAGTGTAAGGTGACGTTCCTCACCGAGCAGCTTGCCATGGTG
GGCTGCTACGATGGATGTCTCTACGGTTTCAATCCCCAAACCGGTAACAT
TGTATTTCGCGTTGGAATTGGTGGCTTAATTAAGTCGCAGCCCATGCTAA
CCGCCGATGGTCGCCGAATCATAGTATGCAGCTATGCCGATGACTACAAT
GTCTATTGCTTGTCAGCCGAGCGGCAGGAGGTGCTGTGGTGCCTAAGGAT
CGGTGAAAAACCGATCTTTGCGAGTCCTTTGGAGCTGCCGAGGGAACAGT
CGCTGATAGTCTGCACTTTGGACGGCAGCTACTCACGTGTGGCCATTACC
GATGGCTCAGTGGAGTGGACGCAGAAATTTAGAGAACCAGTATTCTCCAC
ACCTGTTCTTTTGGAATCCGTATCCAATATTTTTCTAAGCGCGGAAGTGG
CTGGGCGAGTCCATGCCTGTCATGTGGGCAATGGCAAAATTCTGGCTACC
TTCAGCACAGAAGGAAACATTTTCTCTTCGCTAGTGGTCAAGACCCCACC
GACTTTTATGGGACATTCCTTTGCCATTTTTGGTTGCATAGACCAACATT
TGTATTGCCTGCGATGCAAAACCGGACCGGGTGGCAAATCTGTTGAGCTT
GAGCTGCACTGGAAGGTCGATGTGGGTGCACCCATATATGCCACGCCAAC
TTTGCTAACAGTGCAGCCGAACGGTCTTTTGGTTTGGTGCGCCGCCACCG
ATGGACGCGTCATGCTGATAAACTTTAGAAATGGCGAGATTCAGTGGTCG
GATAAACTACCCGGTCAAGTCTTTTCCAGTGCATGCTTTATTGAGGACCT
GCGTCGTGTTTTCGTGGGATGCCGAGACAATTTCCTTTACTGTCTGGGCA
TCTAGAAGCTTTCTAGACCAT
BS28712.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:26:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U26-RC | 3039 | CG13401-PC | 1..3039 | 17..3055 | 15195 | 100 | Plus |
| U26-RA | 3039 | CG13401-PA | 1..3039 | 17..3055 | 15195 | 100 | Plus |
| U26-RD | 972 | CG13401-PD | 1..972 | 17..977 | 4660 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:26:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U26-RC | 3353 | CG13401-RC | 153..3192 | 17..3056 | 15200 | 100 | Plus |
| U26-RA | 3422 | CG13401-RA | 153..3192 | 17..3056 | 15200 | 100 | Plus |
| U26-RD | 3433 | CG13401-RD | 153..3203 | 17..3056 | 15055 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:26:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8446565..8447869 | 2641..1337 | 6525 | 100 | Minus |
| 2L | 23513712 | 2L | 8447918..8448355 | 1339..902 | 2190 | 100 | Minus |
| 2L | 23513712 | 2L | 8446091..8446505 | 3056..2642 | 2075 | 100 | Minus |
| 2L | 23513712 | 2L | 8448759..8449097 | 621..283 | 1695 | 100 | Minus |
| 2L | 23513712 | 2L | 8448425..8448708 | 903..620 | 1420 | 100 | Minus |
| 2L | 23513712 | 2L | 8449158..8449424 | 283..17 | 1335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:26:43 has no hits.
BS28712.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 13:47:01 Download gff for
BS28712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U26-RA | 148..3186 | 17..3055 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:06 Download gff for
BS28712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U26-RA | 153..3191 | 17..3055 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:56 Download gff for
BS28712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U26-RA | 153..3191 | 17..3055 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:56 Download gff for
BS28712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8446092..8446505 | 2642..3055 | 100 | <- | Minus |
| 2L | 8446565..8447868 | 1338..2641 | 100 | <- | Minus |
| 2L | 8447920..8448353 | 904..1337 | 100 | <- | Minus |
| 2L | 8448425..8448706 | 622..903 | 100 | <- | Minus |
| 2L | 8448759..8449097 | 283..621 | 100 | <- | Minus |
| 2L | 8449159..8449424 | 17..282 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:06 Download gff for
BS28712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8449159..8449424 | 17..282 | 100 | | Minus |
| arm_2L | 8446092..8446505 | 2642..3055 | 100 | <- | Minus |
| arm_2L | 8446565..8447868 | 1338..2641 | 100 | <- | Minus |
| arm_2L | 8447920..8448353 | 904..1337 | 100 | <- | Minus |
| arm_2L | 8448425..8448706 | 622..903 | 100 | <- | Minus |
| arm_2L | 8448759..8449097 | 283..621 | 100 | <- | Minus |
BS28712.pep Sequence
Translation from 16 to 3054
> BS28712.pep
MIPSDMDLIESTAEQPDKLYNINRIRAFKDVPFLIRRTESKDTIVSYADA
ADEIQVLMNFLRKNGVPDEAGIALRVTEHTPASSLMILAILNNKCHFFPT
DKMMLSQDLYSQMSTAGVDYLVANKHLTVAPLYFTFLGSILVFKEDCRLY
RVKLKSADETVQSKKPLPANMCYTISTTGTTGKPKLIHVPYECIAPNIVG
LSQKLNVSMADIIYLGTPITFDPFVVEFFLALQNGATLLTSRHSMRDSPS
KVLSALFPDNLATPGITVLQMTPSLFRQFGASSIKDRVLSGSSSLRVLLL
GGEPFPSNVELVTWMHPSVLMQKHICNIYGITEISCWSLLHIVQSLQSPV
PLGTPIEEDTVLRIESEDNETSQQGELFLGSVKRRCYIPEVDDQANASQD
DSGICFRATGDLVTRQQDGTLFYSERSNDVVKRAGNRISLGLITRKIQKC
LPSSELTTCLWLEDLQKLICCIRTLESKTRVQQRVQTFDILSKVSIAEQP
DRFVYLQHFPCNVHGKLDKQQLLKMCIPLAQPAQQILKSYLHDRLECVEE
PDDSASKKQRLDDAAPCGYDLSFRQAGGTSFHAITICREIGLQMCIDDEQ
RHLFEMLLDENIPLRTVLRFLDTAKLVANNIKRKNVETAVVVSACQSGLI
IKRIEQPVLKLQIYWKVNFEKCIDSPVTEYEGRFICVGAHSKILRTLNPQ
TGSEYSVVKLPERIECKVTFLTEQLAMVGCYDGCLYGFNPQTGNIVFRVG
IGGLIKSQPMLTADGRRIIVCSYADDYNVYCLSAERQEVLWCLRIGEKPI
FASPLELPREQSLIVCTLDGSYSRVAITDGSVEWTQKFREPVFSTPVLLE
SVSNIFLSAEVAGRVHACHVGNGKILATFSTEGNIFSSLVVKTPPTFMGH
SFAIFGCIDQHLYCLRCKTGPGGKSVELELHWKVDVGAPIYATPTLLTVQ
PNGLLVWCAATDGRVMLINFRNGEIQWSDKLPGQVFSSACFIEDLRRVFV
GCRDNFLYCLGI*
BS28712.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U26-PC | 1012 | CG13401-PC | 1..1012 | 1..1012 | 5274 | 100 | Plus |
| U26-PA | 1012 | CG13401-PA | 1..1012 | 1..1012 | 5274 | 100 | Plus |
| U26-PD | 323 | CG13401-PD | 1..299 | 1..299 | 1506 | 99.3 | Plus |
