BS28713.complete Sequence
1565 bp assembled on 2012-03-26
GenBank Submission: KX802226
> BS28713.complete
GAAGTTATCAGTCGACATGAGCCACATACCCATTAGTAACACAATTCCAA
CAAAACAAACTGATGGTAATGGTAAAGCTAACATTTCGCCGGATAAGCTG
GATCCCAAGGTTTCGATCGACATGGAGGCGCCGGAGTTCAAGGATTTTGC
CAAGACAATGGTCGACTTTATAGCCGAATATCTGGAGAATATACGCGAAA
GGCGCGTTCTGCCGGAAGTGAAGCCTGGCTACCTGAAGCCATTGATTCCG
GATGCTGCGCCCGAGAAGCCGGAGAAGTGGCAGGATGTGATGCAGGACAT
CGAGCGAGTCATCATGCCGGGCGTGACACACTGGCACAGTCCCAAGTTTC
ATGCCTACTTCCCCACGGCCAACTCGTATCCAGCGATCGTTGCGGACATG
CTGAGTGGAGCGATTGCCTGCATCGGATTCACGTGGATCGCCAGTCCCGC
GTGCACGGAACTCGAGGTGGTCATGATGGATTGGCTGGGCAAGATGCTGG
AGCTGCCGGCAGAGTTCCTGGCCTGTTCGGGCGGCAAGGGTGGCGGTGTC
ATCCAGGGCACGGCCAGTGAGTCCACACTGGTGGCTCTGCTGGGAGCCAA
GGCCAAGAAGTTGAAGGAGGTGAAGGAGCTCCATCCGGAGTGGGATGAGC
ACACCATCTTGGGCAAGTTGGTGGGCTACTGCTCGGACCAGGCTCACTCA
TCCGTGGAGCGGGCTGGTCTTCTGGGCGGAGTAAAGCTCCGTTCCGTGCA
GTCCGAGAATCACAGAATGCGTGGTGCTGCCCTGGAAAAGGCCATCGAAC
AGGATGTGGCCGAGGGTTTGATTCCCTTCTACGCGGTGGTCACCCTGGGC
ACCACCAACTCCTGCGCCTTCGACTACTTGGATGAGTGTGGACCGGTGGG
AAACAAGCACAATTTGTGGATCCATGTGGACGCTGCCTATGCCGGATCCG
CTTTCATTTGCCCCGAGTATCGCCACCTGATGAAGGGCATCGAATCAGCA
GACTCTTTCAATTTCAATCCACACAAATGGATGCTGGTGAACTTTGACTG
CTCGGCCATGTGGCTGAAGGATCCCAGTTGGGTGGTCAACGCGTTCAATG
TGGACCCTCTTTACCTGAAGCACGACATGCAGGGATCAGCTCCGGACTAT
CGTCACTGGCAAATCCCACTTGGACGGCGATTCAGGGCACTGAAGCTCTG
GTTCGTCCTCCGGCTGTACGGTGTCGAGAATCTCCAGGCCCACATCCGCA
GACACTGCAACTTTGCCAAGCAGTTCGGGGATCTCTGCGTGGCGGACTCC
AGATTTGAACTGGCCGCCGAGATCAATATGGGATTGGTCTGCTTCCGGCT
GAAGGGCAGCAACGAGCGGAACGAAGCTCTTCTCAAGCGAATCAATGGAC
GCGGCCACATCCACTTGGTTCCCGCCAAGATCAAGGATGTCTACTTCCTG
CGCATGGCCATTTGCTCGCGATTCACCCAGTCCGAGGACATGGAGTACTC
GTGGAAGGAGGTCAGCGCCGCTGCCGACGAGATGGAACAGGAGCAGTAAA
AGCTTTCTAGACCAT
BS28713.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddc-RC | 1533 | CG10697-PC | 1..1533 | 17..1549 | 7665 | 100 | Plus |
| Ddc-RD | 1428 | CG10697-PD | 1..1428 | 122..1549 | 7140 | 100 | Plus |
| Ddc-RB | 1428 | CG10697-PB | 1..1428 | 122..1549 | 7140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:20:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddc-RC | 2085 | CG10697-RC | 255..1788 | 17..1550 | 7670 | 100 | Plus |
| Ddc-RB | 1929 | CG10697-RB | 196..1632 | 114..1550 | 7185 | 100 | Plus |
| Ddc-RD | 2797 | CG10697-RD | 1065..2500 | 115..1550 | 7180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19116780..19118130 | 1550..200 | 6755 | 100 | Minus |
| 2L | 23513712 | 2L | 19119319..19119417 | 115..17 | 495 | 100 | Minus |
| 2L | 23513712 | 2L | 19119155..19119242 | 202..115 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:20:20 has no hits.
BS28713.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 15:14:56 Download gff for
BS28713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RC | 249..1779 | 17..1547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:09 Download gff for
BS28713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RC | 255..1785 | 17..1547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:02 Download gff for
BS28713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RC | 255..1785 | 17..1547 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:02 Download gff for
BS28713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19116783..19118128 | 202..1547 | 100 | <- | Minus |
| 2L | 19119156..19119241 | 116..201 | 100 | <- | Minus |
| 2L | 19119319..19119417 | 17..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:09 Download gff for
BS28713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19119319..19119417 | 17..115 | 100 | | Minus |
| arm_2L | 19116783..19118128 | 202..1547 | 100 | <- | Minus |
| arm_2L | 19119156..19119241 | 116..201 | 100 | <- | Minus |
BS28713.pep Sequence
Translation from 16 to 1548
> BS28713.pep
MSHIPISNTIPTKQTDGNGKANISPDKLDPKVSIDMEAPEFKDFAKTMVD
FIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIM
PGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELE
VVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLK
EVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHR
MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNL
WIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWL
KDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRL
YGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNE
RNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVS
AAADEMEQEQ*
BS28713.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddc-PC | 510 | CG10697-PC | 1..510 | 1..510 | 2727 | 100 | Plus |
| Ddc-PD | 475 | CG10697-PD | 1..475 | 36..510 | 2544 | 100 | Plus |
| Ddc-PB | 475 | CG10697-PB | 1..475 | 36..510 | 2544 | 100 | Plus |
| Hdc-PC | 619 | CG3454-PC | 1..476 | 36..509 | 1390 | 52.5 | Plus |
| Hdc-PD | 847 | CG3454-PD | 1..476 | 36..509 | 1390 | 52.5 | Plus |
