BS28714.complete Sequence
1628 bp assembled on 2012-03-26
GenBank Submission: KX801847
> BS28714.complete
GAAGTTATCAGTCGACATGGCGCGTTGGTGGCCAATTTTGAGCGTTGTGT
GCCTCTGCCTTGCTGTTGCACATGGCCAGGACAAGCTGGAGGGCGTTGAT
GTGGAGGAGGTGTGCGCCGATCGTCCCGCGGATGAGTACTTCCGCCTGGA
GACCGACGGCGACTGCCGCGAGGTGTACAGGTGCGACAGTGCCGGCGAAG
ATGGCACTTGGCGTTTGGCGCCGATTCGCTGCGCCGGCGGCCTGGCATTC
GATGTTTTGCGCCAACTTTGCGATTGGAAGTCGAATGTGAAGTCCTGCGA
TGTGCTCGAGAAGCCGCGCAAGGCCAAGCCCATCCTGAAGACGGATGAGC
CCATCTGTCCCGAGGGTAAGCTGTCCTGCGGCGACGGCGAGTGCCTGGAC
AAGGAGCTCTTCTGCAACGGCAAGTCCGACTGCAAGGACGAATCCGATGA
GAACGCCTGCTCTGTCGATGAGGATCCCAACCGCGCCCCCGAATGCGATC
CGACGCAGTGCGCCCTGCCCGACTGCTTCTGCTCGGCGGACGGAACCCGC
ATTCCCGGCGGCATTGAGCCCCAACAGGTGCCCCAGATGATCACGATCAC
CTTCAACGGCGCCGTCAACGTGGACAACATCGACCTGTACGAGGACATCT
TCAACGGACAGCGCCAGAATCCCAACGGCTGCTCCATCAAGGGCACCTTC
TTCGTGTCCCACAAGTACACCAACTACTCGGCGGTGCAGGACCTTCATCG
TCGCGGACACGAGATCTCCGTGTTCTCGCTAACGCACAAGGATGACCCCA
ACTACTGGACCGGCGGCAGCTACGACGACTGGCTGGCCGAGATGGCCGGC
TCCCGACTGATCGTGGAGCGCTTCGCCAACATCACCGACGGCTCCATCAT
CGGCATGCGGGCGCCCTACCTCCGCGTGGGCGGCAACAAGCAGTTCGAGA
TGATGGCCGATCAGTTCTTCGTGTACGACGCCTCCATCACCGCCTCCCTT
GGCCGCGTGCCCATTTGGCCATACACCCTGTACTTCCGCATGCCGCACAA
GTGCAACGGCAACGCGCACAACTGCCCATCGAGGAGCCACCCCGTGTGGG
AGATGGTCATGAACGAGCTGGACCGGCGCGACGATCCCACCTTCGACGAG
TCCCTGCCCGGTTGCCATATGGTGGACTCCTGCTCAAACGTAGCCAGCGG
CGACCAGTTCGCACGCCTGCTGCGCCACAACTTCAACCGCCACTACAATA
GCAACCGTGCTCCACTTGGACTCCACTTCCACGCTTCGTGGCTGAAGTCG
AAGAAGGAGTACCGCGACGAGCTGATCAAATTCATCGAGGAGATGCTCGG
CCGCAACGACGTGTTCTTCGTGACCAACCTGCAGGTGATCCAGTGGATGC
AGAACCCCACCGAGCTGAACTCGCTGCGCGACTTCCAGGAGTGGAAGGAG
AAGTGCGACGTCAAGGGCCAGCCCTACTGCTCTCTGCCCAACGCGTGTCC
CCTGACCACCAGGGAGCTGCCCGGCGAGACGCTGCGTCTCTTCACGTGCA
TGGAGTGCCCCAACAACTACCCCTGGATCCTGGATCCCACCGGCGATGGC
TTCTCCGTTTAAAAGCTTTCTAGACCAT
BS28714.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:16:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| verm-RH | 1596 | CG8756-PH | 1..1596 | 17..1612 | 7980 | 100 | Plus |
| verm-RI | 1668 | CG8756-PI | 125..1668 | 69..1612 | 7720 | 100 | Plus |
| verm-RG | 1578 | CG8756-PG | 274..1578 | 308..1612 | 6525 | 100 | Plus |
| verm-RI | 1668 | CG8756-PI | 1..52 | 17..68 | 260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:16:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| verm-RH | 2183 | CG8756-RH | 114..1710 | 16..1612 | 7985 | 100 | Plus |
| verm-RI | 2255 | CG8756-RI | 239..1782 | 69..1612 | 7720 | 100 | Plus |
| verm-RG | 2165 | CG8756-RG | 388..1692 | 308..1612 | 6525 | 100 | Plus |
| verm-RI | 2255 | CG8756-RI | 114..166 | 16..68 | 265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:16:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19690506..19691656 | 1612..462 | 5755 | 100 | Minus |
| 3L | 28110227 | 3L | 19701556..19702487 | 1404..473 | 915 | 73.7 | Minus |
| 3L | 28110227 | 3L | 19691809..19691958 | 461..312 | 750 | 100 | Minus |
| 3L | 28110227 | 3L | 19692721..19692853 | 311..179 | 665 | 100 | Minus |
| 3L | 28110227 | 3L | 19692981..19693095 | 182..68 | 575 | 100 | Minus |
| 3L | 28110227 | 3L | 19694973..19695025 | 68..16 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:16:10 has no hits.
BS28714.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:35 Download gff for
BS28714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| verm-RC | 111..1704 | 17..1610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:55 Download gff for
BS28714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| verm-RF | 114..410 | 17..313 | 99 | -> | Plus |
| verm-RF | 524..1820 | 314..1610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:24:08 Download gff for
BS28714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| verm-RH | 115..1708 | 17..1610 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:24:08 Download gff for
BS28714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19690508..19691656 | 462..1610 | 100 | <- | Minus |
| 3L | 19691809..19691958 | 312..461 | 100 | <- | Minus |
| 3L | 19692721..19692851 | 181..311 | 100 | <- | Minus |
| 3L | 19692983..19693094 | 69..180 | 100 | <- | Minus |
| 3L | 19694973..19695024 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:55 Download gff for
BS28714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19683608..19684756 | 462..1610 | 100 | <- | Minus |
| arm_3L | 19684909..19685058 | 312..461 | 100 | <- | Minus |
| arm_3L | 19685821..19685951 | 181..311 | 100 | <- | Minus |
| arm_3L | 19686083..19686194 | 69..180 | 100 | <- | Minus |
| arm_3L | 19688073..19688124 | 17..68 | 100 | | Minus |
BS28714.pep Sequence
Translation from 16 to 1611
> BS28714.pep
MARWWPILSVVCLCLAVAHGQDKLEGVDVEEVCADRPADEYFRLETDGDC
REVYRCDSAGEDGTWRLAPIRCAGGLAFDVLRQLCDWKSNVKSCDVLEKP
RKAKPILKTDEPICPEGKLSCGDGECLDKELFCNGKSDCKDESDENACSV
DEDPNRAPECDPTQCALPDCFCSADGTRIPGGIEPQQVPQMITITFNGAV
NVDNIDLYEDIFNGQRQNPNGCSIKGTFFVSHKYTNYSAVQDLHRRGHEI
SVFSLTHKDDPNYWTGGSYDDWLAEMAGSRLIVERFANITDGSIIGMRAP
YLRVGGNKQFEMMADQFFVYDASITASLGRVPIWPYTLYFRMPHKCNGNA
HNCPSRSHPVWEMVMNELDRRDDPTFDESLPGCHMVDSCSNVASGDQFAR
LLRHNFNRHYNSNRAPLGLHFHASWLKSKKEYRDELIKFIEEMLGRNDVF
FVTNLQVIQWMQNPTELNSLRDFQEWKEKCDVKGQPYCSLPNACPLTTRE
LPGETLRLFTCMECPNNYPWILDPTGDGFSV*
BS28714.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| verm-PH | 531 | CG8756-PH | 1..531 | 1..531 | 2956 | 100 | Plus |
| verm-PI | 555 | CG8756-PI | 1..555 | 1..531 | 2916 | 95.5 | Plus |
| verm-PG | 525 | CG8756-PG | 1..525 | 1..531 | 2819 | 95.7 | Plus |
| serp-PC | 541 | CG32209-PC | 45..540 | 30..529 | 1759 | 60 | Plus |
| serp-PB | 541 | CG32209-PB | 45..540 | 30..529 | 1759 | 60 | Plus |
