BS28716.complete Sequence
668 bp assembled on 2012-03-26
GenBank Submission: KX803411
> BS28716.complete
GAAGTTATCAGTCGACATGAGCACGGTGTTCATAAACTCGCGCAAGAGCC
CCAACGTGCTGAAAAAACAGGGCACCGACCAGTGGGTCAAGCTGAACGTA
GGCGGTACCTACTTCCTCACCACAAAGACGACGCTCTCCCGTGACCCAAA
TTCGTTCCTCTCCCGTCTGATTCAGGAGGACTGCGACTTGATATCAGATC
GGGACGAGACAGGAGCCTACCTGATCGACAGAGACCCCAAATACTTTGCA
CCCGTGCTCAATTACCTGCGCCACGGCAAGCTTGTGCTCGATGGCGTCTC
AGAGGAAGGCGTCCTGGAGGAGGCTGAGTTCTACAACGTGACGCAGCTGA
TAGCGCTGCTGAAGGAGTGCATCCTGCACAGGGATCAGCGACCCCAAACG
GACAAGAAGCGCGTTTATCGTGTGCTGCAGTGCCGCGAGCAGGAACTAAC
CCAGATGATCTCAACGCTGTCGGATGGCTGGAGGTTCGAGCAGCTGATCA
GCATGCAGTACACGAACTACGGGCCCTTCGAAAACAATGAGTTCCTGTGC
GTGGTATCCAAAGAGTGTGGCACAACGGCCGGCCGGGAGCTGGAGCTCAA
CGACCGGGCCAAGGTCCTGCAGCAGAAGGGATCGCGAATTCTTGGAATTT
AAAAGCTTTCTAGACCAT
BS28716.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:16:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| inc-RC | 636 | CG32810-PC | 1..636 | 17..652 | 3180 | 100 | Plus |
| inc-RD | 636 | CG32810-PD | 1..636 | 17..652 | 3180 | 100 | Plus |
| inc-RB | 636 | CG32810-PB | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| inc-RC | 2776 | CG32810-RC | 393..1029 | 16..652 | 3185 | 100 | Plus |
| inc-RD | 4686 | CG32810-RD | 1825..2461 | 16..652 | 3185 | 100 | Plus |
| inc-RB | 3254 | CG32810-RB | 393..1029 | 16..652 | 3185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1513462..1513649 | 16..203 | 940 | 100 | Plus |
| X | 23542271 | X | 1514854..1515041 | 452..639 | 940 | 100 | Plus |
| X | 23542271 | X | 1514482..1514668 | 202..388 | 935 | 100 | Plus |
| X | 23542271 | X | 1514724..1514796 | 386..458 | 350 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:16:13 has no hits.
BS28716.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:36 Download gff for
BS28716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32810-RB | 405..1038 | 17..650 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:58 Download gff for
BS28716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inc-RB | 394..1027 | 17..650 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:24:10 Download gff for
BS28716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inc-RB | 394..1027 | 17..650 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:24:10 Download gff for
BS28716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1513463..1513648 | 17..202 | 100 | -> | Plus |
| X | 1514483..1514668 | 203..388 | 100 | -> | Plus |
| X | 1514727..1514792 | 389..454 | 100 | -> | Plus |
| X | 1514857..1515041 | 455..639 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:58 Download gff for
BS28716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1407496..1407681 | 17..202 | 100 | -> | Plus |
| arm_X | 1408516..1408701 | 203..388 | 100 | -> | Plus |
| arm_X | 1408760..1408825 | 389..454 | 100 | -> | Plus |
| arm_X | 1408890..1409074 | 455..639 | 100 | | Plus |
BS28716.pep Sequence
Translation from 16 to 651
> BS28716.pep
MSTVFINSRKSPNVLKKQGTDQWVKLNVGGTYFLTTKTTLSRDPNSFLSR
LIQEDCDLISDRDETGAYLIDRDPKYFAPVLNYLRHGKLVLDGVSEEGVL
EEAEFYNVTQLIALLKECILHRDQRPQTDKKRVYRVLQCREQELTQMIST
LSDGWRFEQLISMQYTNYGPFENNEFLCVVSKECGTTAGRELELNDRAKV
LQQKGSRILGI*
BS28716.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| inc-PC | 211 | CG32810-PC | 1..211 | 1..211 | 1096 | 100 | Plus |
| inc-PD | 211 | CG32810-PD | 1..211 | 1..211 | 1096 | 100 | Plus |
| inc-PB | 211 | CG32810-PB | 1..211 | 1..211 | 1096 | 100 | Plus |
| CG14647-PB | 335 | CG14647-PB | 33..157 | 21..138 | 247 | 44 | Plus |
| CG9467-PA | 730 | CG9467-PA | 13..105 | 24..118 | 152 | 38.9 | Plus |
