Clone BS28717 Report

Search the DGRC for BS28717

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:287
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG42761-RA
Protein status:BS28717.pep: full length peptide match
Sequenced Size:374

Clone Sequence Records

BS28717.complete Sequence

374 bp assembled on 2012-03-26

GenBank Submission: KX802992

> BS28717.complete
GAAGTTATCAGTCGACATGAGTACACTTCGTTGCTGCATTGTTATTCTTT
TTGGAATACTGATTTTTGGAGTGGCAGTGGCTGAAAACAATAAGTTTCAG
GATGAAAGGGATGAACATCATTTTCAGCCCGATGAAGTAAAAAGTTCAGA
TGAAGCTATAGAACGGATACGACGTCAGATTGGAGCTTTTGGAATTGGCG
CTGGATTTTATGGAGGAAGGCATGTTGATTCAATCGGTAATCCCTATTAT
GGGGCTCCATATGGAAATTCCTACTTTGTTCAACCTTACTGGCATTACTT
CCATGATCGCAGATTTGGAGCCAACTACGGTTTCGGTGGACATTTCTATG
GTCGCTAGAAGCTTTCTAGACCAT

BS28717.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 04:16:18 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9759-RC 1877 CG9759-RC 857..1199 17..359 1715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13608048..13608390 359..17 1715 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:16:17 has no hits.

BS28717.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:37 Download gff for BS28717.complete
Subject Subject Range Query Range Percent Splice Strand
CG42761-RA 1..342 17..358 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:00 Download gff for BS28717.complete
Subject Subject Range Query Range Percent Splice Strand
CG42761-RA 1..342 17..358 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:24:12 Download gff for BS28717.complete
Subject Subject Range Query Range Percent Splice Strand
CG9759-RC 857..1198 17..358 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:24:12 Download gff for BS28717.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13608049..13608390 17..358 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:00 Download gff for BS28717.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9433771..9434112 17..358 100   Minus

BS28717.pep Sequence

Translation from 16 to 357

> BS28717.pep
MSTLRCCIVILFGILIFGVAVAENNKFQDERDEHHFQPDEVKSSDEAIER
IRRQIGAFGIGAGFYGGRHVDSIGNPYYGAPYGNSYFVQPYWHYFHDRRF
GANYGFGGHFYGR*
Sequence BS28717.pep has no blast hits.