Clone BS28719 Report

Search the DGRC for BS28719

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:287
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG43164-RA
Protein status:BS28719.pep: full length peptide match
Sequenced Size:617

Clone Sequence Records

BS28719.complete Sequence

617 bp assembled on 2012-03-26

GenBank Submission: KX801537

> BS28719.complete
GAAGTTATCAGTCGACATGGCCAAAATCGTACTCTTCTGCCTGCTGAGCC
TCTTGGCATGCGCTGCAGGTCAACGCATTACGACAATCCACCTGGATGGA
GTGCAGTACTTCATCAGCCGAATGAATCCCTACTCCCCGGAGCTCAACTA
CTTCCTGGCCTACCAGTACTGTCGCTCCCTGGGCCTGCAACTGGCCTCCT
TTGAGACGAAGGAGAAGGCCGAGTCGATGACCACGTATCTGAAGAATGCC
GGTTACGGCAACTACGATTTCTGGACCTCCGGCAATCGCCTGGGCACGGG
CATGTTCCTATGGATGAGCACTGGTCTGCCGTTTAACGCCACTTTTGATT
TCTTCGAAAACTCGGCGGACGCCATCCAGGCCGGTCTGCTCGATCCCGTC
GATCATAATAGCAACACCTCACCCCAGCGCACCGCTCGCGACAGCAGCAG
TGGCGCCGAGAAGGGATGCGTGATCCTGAAGCAGCCCACGCTCAAGTGGA
TGCCCGAGGACTGCTCGGCCGTGAAGGACTTCATTTGTGAGCAGACCCGC
TGCTACTACTACAACTACGGCAGCATCCCCGTCTCGTCGGCGCAGGGGTA
AAAGCTTTCTAGACCAT

BS28719.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG43164-RD 585 CG43164-PD 1..585 17..601 2925 100 Plus
CG43164-RA 585 CG43164-PA 1..585 17..601 2925 100 Plus
CG43164-RC 1476 CG43164-PC 1..581 17..597 2905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG43164-RD 1962 CG43164-RD 233..817 17..601 2925 100 Plus
CG43164-RA 2450 CG43164-RA 233..817 17..601 2925 100 Plus
CG43164-RC 2338 CG43164-RC 556..1136 17..597 2905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17505634..17506011 67..444 1890 100 Plus
2R 25286936 2R 17506154..17506314 441..601 805 100 Plus
2R 25286936 2R 17502909..17502962 17..70 270 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:16:25 has no hits.

BS28719.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:38 Download gff for BS28719.complete
Subject Subject Range Query Range Percent Splice Strand
CG18431-RA 182..764 17..599 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:04 Download gff for BS28719.complete
Subject Subject Range Query Range Percent Splice Strand
CG43164-RA 233..815 17..599 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:24:15 Download gff for BS28719.complete
Subject Subject Range Query Range Percent Splice Strand
CG43164-RA 233..815 17..599 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:24:15 Download gff for BS28719.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17502909..17502960 17..68 100 -> Plus
2R 17505636..17506011 69..444 100 -> Plus
2R 17506158..17506312 445..599 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:04 Download gff for BS28719.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13390414..13390465 17..68 100 -> Plus
arm_2R 13393141..13393516 69..444 100 -> Plus
arm_2R 13393663..13393817 445..599 100   Plus

BS28719.pep Sequence

Translation from 16 to 600

> BS28719.pep
MAKIVLFCLLSLLACAAGQRITTIHLDGVQYFISRMNPYSPELNYFLAYQ
YCRSLGLQLASFETKEKAESMTTYLKNAGYGNYDFWTSGNRLGTGMFLWM
STGLPFNATFDFFENSADAIQAGLLDPVDHNSNTSPQRTARDSSSGAEKG
CVILKQPTLKWMPEDCSAVKDFICEQTRCYYYNYGSIPVSSAQG*

BS28719.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG43164-PD 194 CG43164-PD 1..194 1..194 1039 100 Plus
CG43164-PA 194 CG18431-PA 1..194 1..194 1039 100 Plus
CG43164-PC 491 CG43164-PC 1..194 1..194 1039 100 Plus
CG43164-PB 193 CG18431-PB 1..193 1..194 1023 99.5 Plus
CG43164-PE 490 CG43164-PE 1..193 1..194 1023 99.5 Plus