Clone BS28722 Report

Search the DGRC for BS28722

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:287
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG10508-RH
Protein status:BS28722.pep: full length peptide match
Sequenced Size:557

Clone Sequence Records

BS28722.complete Sequence

557 bp assembled on 2012-04-25

GenBank Submission: KX804755

> BS28722.complete
GAAGTTATCAGTCGACATGAGCGAATCCGGTGGCTATCAGAAAATGCCGC
CCGGCTGGGACTGCAAATACGATCAAGCAACTGGAAATTGCTATTACATA
AACTATCTGACGAAGGCCATGCAGCTGGAGGATCCGCGCGGCCGCAGTTA
CAGGCAGTTGCAGAACGAACGCTGTTCCACGGAGTCGATAGCCTTGCAGC
AGTTGGTCAGTCAGCCGCAGACGTCGCACAACAGCTCGCCGTACCACGTC
CATCCCAGCAACAACTTGACTGCAATTCGGGCCTTCCAGGAGCGCCAGCA
ACCCACGCTGCACAACATCTCTACCAGTCCATTGTTGTCGGCCTCCTCCA
GGGGACACTTGGAAATGTCTTCACCTCTGCCCTTTCAACGAGCTCGCGTG
GGACCGAATCTCTCGCGGCGCTCCACCATTCAGGAGACCTCGTTCACCAC
GCAAGCGGAAACGGATGCCGTGGTGACCAAAATCCAGAACATGTTCCCCA
CCGCTGGCGAGAACCATATACGTCTCCTGCTCAAGCGGTAAAAGCTTTCT
AGACCAT

BS28722.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10508-RL 1338 CG10508-PL 1..521 17..537 2605 100 Plus
CG10508-RK 2202 CG10508-PK 1..521 17..537 2605 100 Plus
CG10508-RJ 2199 CG10508-PJ 1..518 17..537 2525 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10508-RL 2122 CG10508-RL 517..1037 17..537 2605 100 Plus
CG10508-RK 2986 CG10508-RK 517..1037 17..537 2605 100 Plus
CG10508-RJ 2983 CG10508-RJ 517..1034 17..537 2525 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21212781..21212961 361..541 905 100 Plus
3L 28110227 3L 21212224..21212389 197..362 830 100 Plus
3L 28110227 3L 21212049..21212158 90..199 550 100 Plus
3L 28110227 3L 21210731..21210804 17..90 370 100 Plus
Blast to na_te.dros performed on 2014-11-28 12:20:27 has no hits.

BS28722.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:54 Download gff for BS28722.complete
Subject Subject Range Query Range Percent Splice Strand
CG10508-RH 503..1025 17..539 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:47 Download gff for BS28722.complete
Subject Subject Range Query Range Percent Splice Strand
CG10508-RL 517..1039 17..539 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:13 Download gff for BS28722.complete
Subject Subject Range Query Range Percent Splice Strand
CG10508-RK 517..1039 17..539 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:13 Download gff for BS28722.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21210731..21210804 17..90 100 -> Plus
3L 21212050..21212158 91..199 100 -> Plus
3L 21212227..21212388 200..361 100 -> Plus
3L 21212782..21212959 362..539 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:47 Download gff for BS28722.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21203831..21203904 17..90 100 -> Plus
arm_3L 21205150..21205258 91..199 100 -> Plus
arm_3L 21205327..21205488 200..361 100 -> Plus
arm_3L 21205882..21206059 362..539 100   Plus

BS28722.pep Sequence

Translation from 16 to 540

> BS28722.pep
MSESGGYQKMPPGWDCKYDQATGNCYYINYLTKAMQLEDPRGRSYRQLQN
ERCSTESIALQQLVSQPQTSHNSSPYHVHPSNNLTAIRAFQERQQPTLHN
ISTSPLLSASSRGHLEMSSPLPFQRARVGPNLSRRSTIQETSFTTQAETD
AVVTKIQNMFPTAGENHIRLLLKR*

BS28722.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10508-PL 445 CG10508-PL 1..174 1..174 913 100 Plus
CG10508-PK 733 CG10508-PK 1..174 1..174 913 100 Plus
CG10508-PJ 732 CG10508-PJ 1..173 1..174 896 99.4 Plus