BS28733.complete Sequence
758 bp assembled on 2012-03-26
GenBank Submission: KX805529
> BS28733.complete
GAAGTTATCAGTCGACATGCACTGGCATCTCGATTGTAGCCTAGACATTG
AGCCGCAACTCCTGGCCAACGGTGGTGCAGCGGCCGTTCCAATCACTCCG
GCAAACTGCCTGAAACAGCAGCACGGTGTGGTGCGAATCAGACCCCGCTC
GAACGTGGAACCGTTCTTTGTTTTTTGCGATCAGAAGGTCAGAAACGGTG
GTTGGACAATGGTAGTTAATCGTTATGATGGCAGTGAGGATTTCAATCGA
AAGTGGGCGGATTACAAGATCGGTTTCGGGCCACTAACCACCGAGTTCTT
CATCGGATTGGATAAATTGCATCAGATTACGAGCAGTGACAACTATGAGC
TTTTGGTTCAGCTGCAGAATCGAAAGCAGGAGCTGAGATATGCCCTATAT
GATCACTTTAGCATCGGCAGTGAATCGGAACAGTATCGTCTGAATGTCTT
GGGGGATTATCACGGCGATGCTGCCGATGCATTGCGTGACCACACGGGAA
AGAAATTCAGTACCCACGATAGGGTTAATGATGAAAATGAGCAAAACTGC
GCGGCTCAGCAGTCGGGAGCTTTTTGGTATGGCGGCTCTTGCAATCTCAC
CAACCCATTTGGCCTATATCAACGCCTTCTAGAACGGGATGTTGATGGTT
TCAAGGGCATTCTATGGCGCGGTTTCTTAAATGGACCCAAAGGTTCCCTG
AAAATAGTTCGCATGATGGTTCGTCCACGCGCCGCTTTATAAAAGCTTTC
TAGACCAT
BS28733.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1889-RC | 999 | CG1889-PC | 278..999 | 17..742 | 3535 | 99.4 | Plus |
| CG1889-RA | 999 | CG1889-PA | 278..999 | 17..742 | 3535 | 99.4 | Plus |
| CG1889-RD | 1017 | CG1889-PD | 313..1017 | 38..742 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:17:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1889-RE | 1227 | CG1889-RE | 387..1113 | 17..743 | 3635 | 100 | Plus |
| CG1889-RC | 1223 | CG1889-RC | 387..1109 | 17..743 | 3540 | 99.4 | Plus |
| CG1889-RA | 1468 | CG1889-RA | 387..1109 | 17..743 | 3540 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9965835..9966397 | 38..600 | 2815 | 100 | Plus |
| X | 23542271 | X | 9966458..9966600 | 601..743 | 715 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:17:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dwil\Mar | 610 | Dwil\Mar MAR 610bp Derived from AF518731. | 139..189 | 210..160 | 111 | 68.6 | Minus |
BS28733.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:43 Download gff for
BS28733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1889-RB | 387..1110 | 17..740 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:17 Download gff for
BS28733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1889-RE | 387..1110 | 17..740 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:24:30 Download gff for
BS28733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1889-RE | 387..1110 | 17..740 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:24:30 Download gff for
BS28733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9965752..9965774 | 17..39 | 100 | -> | Plus |
| X | 9965837..9966397 | 40..600 | 100 | -> | Plus |
| X | 9966458..9966597 | 601..740 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:17 Download gff for
BS28733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9859785..9859807 | 17..39 | 100 | -> | Plus |
| arm_X | 9859870..9860430 | 40..600 | 100 | -> | Plus |
| arm_X | 9860491..9860630 | 601..740 | 100 | | Plus |
BS28733.pep Sequence
Translation from 16 to 741
> BS28733.pep
MHWHLDCSLDIEPQLLANGGAAAVPITPANCLKQQHGVVRIRPRSNVEPF
FVFCDQKVRNGGWTMVVNRYDGSEDFNRKWADYKIGFGPLTTEFFIGLDK
LHQITSSDNYELLVQLQNRKQELRYALYDHFSIGSESEQYRLNVLGDYHG
DAADALRDHTGKKFSTHDRVNDENEQNCAAQQSGAFWYGGSCNLTNPFGL
YQRLLERDVDGFKGILWRGFLNGPKGSLKIVRMMVRPRAAL*
BS28733.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1889-PD | 338 | CG1889-PD | 105..338 | 8..241 | 1257 | 100 | Plus |
| CG1889-PC | 332 | CG1889-PC | 100..332 | 9..241 | 1253 | 100 | Plus |
| CG1889-PA | 332 | CG1889-PA | 100..332 | 9..241 | 1253 | 100 | Plus |
| CG1791-PC | 333 | CG1791-PC | 119..329 | 27..237 | 684 | 57.8 | Plus |
| CG1791-PA | 334 | CG1791-PA | 120..330 | 27..237 | 684 | 57.8 | Plus |
