BS28734.complete Sequence
1322 bp assembled on 2012-03-26
GenBank Submission: KX801466
> BS28734.complete
GAAGTTATCAGTCGACATGGTGGATCGCAGCGATAATGCGGAATCCTTCG
ACGACGCCGTCGAGGAGCGCGTGATCAATGAGGAGTATAAGATTTGGAAA
AAGAACACGCCGTTCCTGTACGATCTGGTCATGACGCATGCCCTGGAATG
GCCCTCGTTGACTGCCCAGTGGCTGCCGGACGTGACCAAGCAGGATGGCA
AGGACTACTCGGTACATCGTCTTATACTGGGCACACACACATCTGACGAG
CAGAACCATCTACTCATCGCCAGCGTTCAGTTGCCCAGCGAGGATGCCCA
GTTCGATGGTTCGCACTACGATAACGAGAAGGGCGAGTTTGGAGGCTTTG
GATCGGTGTGCGGCAAAATCGAAATCGAGATTAAGATCAACCACGAGGGC
GAAGTGAACAGGGCCCGCTACATGCCCCAGAACGCCTGTGTAATCGCCAC
CAAGACGCCGTCGAGTGATGTCCTGGTCTTCGACTACACGAAGCATCCCA
GCAAGCCGGAACCGTCTGGCGAGTGCCAGCCTGACCTGCGGCTGCGCGGT
CATCAAAAGGAAGGCTACGGACTCTCTTGGAATCCCAACCTCAATGGCTA
TTTGCTGTCAGCCTCTGATGATCACACCATCTGCTTGTGGGACATCAATG
CCACACCCAAGGAGCATAGGGTTATTGATGCCAAGAACATCTTCACCGGC
CACACCGCCGTTGTTGAGGACGTGGCTTGGCATCTGCTACATGAGTCTCT
GTTCGGATCGGTGGCTGACGACCAGAAGCTGATGATCTGGGACACGCGCA
ACAACAACACCTCGAAGCCCTCGCATACAGTGGACGCTCACACAGCGGAA
GTCAATTGCTTGAGCTTTAATCCCTACTCGGAGTTCATTCTGGCCACGGG
CTCCGCTGACAAGACTGTAGCTCTATGGGATCTGCGCAACCTCAAGCTAA
AACTACATTCCTTCGAGTCGCACAAGGACGAGATCTTCCAAGTGCAGTGG
TCGCCGCATAACGAGACTATTCTCGCCTCCTCCGGCACTGACCGCCGCCT
ACACGTCTGGGATTTGTCCAAAATCGGCGAGGAGCAGAGTACGGAGGATG
CTGAGGACGGACCACCCGAGCTGCTCTTCATCCATGGCGGTCACACTGCC
AAGATTAGCGATTTCTCGTGGAACCCCAATGAGCCATGGATCATTTGCTC
CGTGTCCGAGGACAATATTATGCAGGTCTGGCAGATGGCCGAGAATGTTT
ACAACGACGAGGAGCCAGAGATTCCCGCCTCCGAGTTAGAAACCAATACC
GCTTAAAAGCTTTCTAGACCAT
BS28734.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:16:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Caf1-RB | 1290 | CG4236-PB | 1..1290 | 17..1306 | 6450 | 100 | Plus |
| Caf1-RA | 1293 | CG4236-PA | 1..1293 | 17..1306 | 6385 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:16:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Caf1-RB | 1825 | CG4236-RB | 313..1608 | 12..1307 | 6465 | 99.9 | Plus |
| Caf1-RA | 1828 | CG4236-RA | 313..1611 | 12..1307 | 6400 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15226636..15227347 | 596..1307 | 3560 | 100 | Plus |
| 3R | 32079331 | 3R | 15225968..15226527 | 38..597 | 2800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:16:33 has no hits.
BS28734.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:39 Download gff for
BS28734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Caf1-RB | 327..1614 | 17..1304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:07 Download gff for
BS28734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Caf1-RB | 318..1605 | 17..1304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:24:19 Download gff for
BS28734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Caf1-RB | 318..1605 | 17..1304 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:24:19 Download gff for
BS28734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15225893..15225914 | 17..38 | 100 | -> | Plus |
| 3R | 15225969..15226526 | 39..596 | 100 | -> | Plus |
| 3R | 15226637..15227344 | 597..1304 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:07 Download gff for
BS28734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11051615..11051636 | 17..38 | 100 | -> | Plus |
| arm_3R | 11051691..11052248 | 39..596 | 100 | -> | Plus |
| arm_3R | 11052359..11053066 | 597..1304 | 100 | | Plus |
BS28734.pep Sequence
Translation from 16 to 1305
> BS28734.pep
MVDRSDNAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTA
QWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSH
YDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSS
DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS
DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA
DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT
VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL
SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN
IMQVWQMAENVYNDEEPEIPASELETNTA*
BS28734.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Caf1-PB | 429 | CG4236-PB | 1..429 | 1..429 | 2323 | 100 | Plus |
| Caf1-PA | 430 | CG4236-PA | 1..430 | 1..429 | 2311 | 99.8 | Plus |
| l(2)09851-PB | 456 | CG12792-PB | 157..444 | 124..397 | 336 | 31.2 | Plus |
| l(2)09851-PA | 456 | CG12792-PA | 157..444 | 124..397 | 336 | 31.2 | Plus |
| Pex7-PB | 339 | CG6486-PB | 22..328 | 78..405 | 255 | 25.6 | Plus |
