Clone BS28736 Report

Search the DGRC for BS28736

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:287
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptEig71Ea-RA
Protein status:BS28736.pep: full length peptide match
Sequenced Size:335

Clone Sequence Records

BS28736.complete Sequence

335 bp assembled on 2012-03-26

GenBank Submission: KX802363

> BS28736.complete
GAAGTTATCAGTCGACATGCGCCTGAAAACAGTTTTAACCATCTTTTTCG
CCATATCGCTGACTCTGGTTGCTGGTCAAGATCGGGACTGTGATGAATTG
GCAAGGAGATGTGAATCCTGTGTGAGGCGTCTAAATAATACAATCGATCG
CGATTTACCCCTCTTCAATAGAGAGTGCAGACAAAGGACCGAATTATCTT
GGCGCTGGAGGAACGTCGGACGCTGTGAGCTCTCCAAGCTAAATTGCTTG
GGTTGGCAATCACCCATGAACTGTGAAGACATTGCTATGAGGGCTGGTAT
GGAACGCAGGCGTACTTAAAAGCTTTCTAGACCAT

BS28736.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ea-RA 303 CG16931-PA 1..303 17..319 1515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ea-RA 412 CG16931-RA 50..352 17..319 1515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15649315..15649518 253..50 1020 100 Minus
3L 28110227 3L 15649186..15649254 319..251 345 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:16:37 has no hits.

BS28736.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:40 Download gff for BS28736.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ea-RA 50..350 17..317 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:09 Download gff for BS28736.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ea-RA 50..350 17..317 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:24:21 Download gff for BS28736.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ea-RA 50..350 17..317 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:24:21 Download gff for BS28736.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15649188..15649253 252..317 100 <- Minus
3L 15649317..15649517 51..251 100 <- Minus
3L 15649579..15649612 17..50 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:09 Download gff for BS28736.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15642288..15642353 252..317 100 <- Minus
arm_3L 15642417..15642617 51..251 100 <- Minus
arm_3L 15642679..15642712 17..50 100   Minus

BS28736.pep Sequence

Translation from 16 to 318

> BS28736.pep
MRLKTVLTIFFAISLTLVAGQDRDCDELARRCESCVRRLNNTIDRDLPLF
NRECRQRTELSWRWRNVGRCELSKLNCLGWQSPMNCEDIAMRAGMERRRT
*

BS28736.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ea-PA 100 CG16931-PA 1..100 1..100 539 100 Plus
Eig71Ed-PA 99 CG7350-PA 1..97 1..97 327 59.8 Plus
Eig71Ef-PA 98 CG7599-PA 1..97 1..98 170 33.7 Plus
Eig71Ej-PA 98 CG7588-PA 1..98 1..99 159 31.3 Plus