BS28737.complete Sequence
413 bp assembled on 2012-03-26
GenBank Submission: KX800819
> BS28737.complete
GAAGTTATCAGTCGACATGAAGTACCTAATGTTAATTGCCCTTTTTGTGG
TCGCTGCTTCGGCGACGGACAACGATGATCCGATTTCCCAGGAATCCAAT
GTGGAGTACAATGGCAAATACCATTATCATTATGAGCTCAAAGATGGCTC
GAAGGCCACTCAGGATGGAGTCTTGAAGTCCGTGAATGCCGATCACAACG
GGGAGTCGGTCAATGGAAAGTACTCCTTCGTCGCCGACGATGGAAAGACC
TATGTTGTGTCCTACACGGCGGACGAGAACGGATACCTTGCGGTGGGTGA
CCACCTGCCCACACCGCCACCCACGCCGGTGTCCGTTCTGAAGGCTCTGG
AGTACATCCGCCTGCATCCGTACAAGACGCCCGAGCAGAAGCAATAAAAG
CTTTCTAGACCAT
BS28737.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr49Af-RB | 381 | CG8510-PB | 1..381 | 17..397 | 1905 | 100 | Plus |
| Cpr49Af-RA | 381 | CG8510-PA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr49Af-RB | 1056 | CG8510-RB | 73..454 | 16..397 | 1910 | 100 | Plus |
| Cpr49Af-RA | 533 | CG8510-RA | 73..454 | 16..397 | 1910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:17:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12406176..12406443 | 130..397 | 1340 | 100 | Plus |
| 2R | 25286936 | 2R | 12406004..12406117 | 16..129 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:17:17 has no hits.
BS28737.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:45 Download gff for
BS28737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Af-RA | 1..379 | 17..395 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:23 Download gff for
BS28737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Af-RA | 74..452 | 17..395 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:24:37 Download gff for
BS28737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Af-RA | 74..452 | 17..395 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:24:37 Download gff for
BS28737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12406005..12406117 | 17..129 | 100 | -> | Plus |
| 2R | 12406176..12406441 | 130..395 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:23 Download gff for
BS28737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8293510..8293622 | 17..129 | 100 | -> | Plus |
| arm_2R | 8293681..8293946 | 130..395 | 100 | | Plus |
BS28737.pep Sequence
Translation from 16 to 396
> BS28737.pep
MKYLMLIALFVVAASATDNDDPISQESNVEYNGKYHYHYELKDGSKATQD
GVLKSVNADHNGESVNGKYSFVADDGKTYVVSYTADENGYLAVGDHLPTP
PPTPVSVLKALEYIRLHPYKTPEQKQ*
BS28737.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr49Af-PB | 126 | CG8510-PB | 1..126 | 1..126 | 666 | 100 | Plus |
| Cpr49Af-PA | 126 | CG8510-PA | 1..126 | 1..126 | 666 | 100 | Plus |
| Cpr49Aa-PB | 144 | CG30045-PB | 34..135 | 23..124 | 224 | 41.2 | Plus |
| Edg78E-PB | 122 | CG7673-PB | 3..120 | 2..126 | 219 | 39.8 | Plus |
| Edg78E-PA | 122 | CG7673-PA | 3..120 | 2..126 | 219 | 39.8 | Plus |
