BS28739.complete Sequence
590 bp assembled on 2012-03-26
GenBank Submission: KX801749
> BS28739.complete
GAAGTTATCAGTCGACATGTTCCGCTTCATTGCTATCTGTGCCCTGGCCA
CCATTGTCGCCGCTGCACCGGGATTCATTGAGGAGCACCCCGTGGCCGTC
GCCCCAGTTGTGGCCAAAGTAGGTGCCGTGGTGCACAGTGCCCCACTGGC
CACCTCCCACCAGAGCTTCACCCAGTACCACAACCAGGCGGTGCTCACTC
CCGTGGTGAAGCATGTGGTGCCAGCTGTTCCCGTGATTAAGACTGTGGCT
CCAGTGGTTCCTGTGGTCAAGCATGTGGCTCCCATCGTGCCCGTGGTCAA
GCAAGTGGCTCCCATCGTGCCCGTGGTCAAGCACGTGGCTCCAGTGGTTC
CCGTCATCAAGACTGTGCCCGTGGTGCACCACCAGACCTACGTCGCACCC
GCTGTCCACCATGTGGCCGCCGTGCCCGTGGTGAAGGCTCTACCCCATGC
CGTCTCCCACCAGAGCCACACCCAGGTGCACCACCAGAAGACCATCATCA
CCCCGGTGGTTGCTCCTGTGGTCAAGACTGTCGCCGTCGCCGCTGCTCCA
GTGGCCCATGTCTACCATCATTAGAAGCTTTCTAGACCAT
BS28739.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13040-RB | 558 | CG13040-PB | 1..558 | 17..574 | 2790 | 100 | Plus |
| CG13040-RA | 558 | CG13040-PA | 1..558 | 17..574 | 2790 | 100 | Plus |
| CG13040-RB | 558 | CG13040-PB | 183..315 | 229..361 | 275 | 80.5 | Plus |
| CG13040-RB | 558 | CG13040-PB | 213..345 | 199..331 | 275 | 80.5 | Plus |
| CG13040-RA | 558 | CG13040-PA | 183..315 | 229..361 | 275 | 80.5 | Plus |
| CG13040-RA | 558 | CG13040-PA | 213..345 | 199..331 | 275 | 80.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13040-RB | 1419 | CG13040-RB | 797..1356 | 15..574 | 2800 | 100 | Plus |
| CG13040-RA | 659 | CG13040-RA | 37..596 | 15..574 | 2800 | 100 | Plus |
| CG13040-RB | 1419 | CG13040-RB | 981..1113 | 229..361 | 275 | 80.5 | Plus |
| CG13040-RB | 1419 | CG13040-RB | 1011..1143 | 199..331 | 275 | 80.5 | Plus |
| CG13040-RA | 659 | CG13040-RA | 221..353 | 229..361 | 275 | 80.5 | Plus |
| CG13040-RA | 659 | CG13040-RA | 251..383 | 199..331 | 275 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16325146..16325691 | 574..29 | 2730 | 100 | Minus |
| 3L | 28110227 | 3L | 16325359..16325491 | 331..199 | 275 | 80.5 | Minus |
| 3L | 28110227 | 3L | 16325389..16325521 | 361..229 | 275 | 80.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:17:25 has no hits.
BS28739.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:46 Download gff for
BS28739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13040-RA | 44..596 | 22..574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:27 Download gff for
BS28739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13040-RA | 44..596 | 22..574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:24:41 Download gff for
BS28739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13040-RA | 44..596 | 22..574 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:24:41 Download gff for
BS28739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16325146..16325691 | 29..574 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:27 Download gff for
BS28739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16318246..16318791 | 29..574 | 100 | | Minus |
BS28739.pep Sequence
Translation from 16 to 573
> BS28739.pep
MFRFIAICALATIVAAAPGFIEEHPVAVAPVVAKVGAVVHSAPLATSHQS
FTQYHNQAVLTPVVKHVVPAVPVIKTVAPVVPVVKHVAPIVPVVKQVAPI
VPVVKHVAPVVPVIKTVPVVHHQTYVAPAVHHVAAVPVVKALPHAVSHQS
HTQVHHQKTIITPVVAPVVKTVAVAAAPVAHVYHH*
BS28739.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13040-PB | 185 | CG13040-PB | 1..185 | 1..185 | 943 | 100 | Plus |
| CG13040-PA | 185 | CG13040-PA | 1..185 | 1..185 | 943 | 100 | Plus |
| CG13060-PA | 131 | CG13060-PA | 1..131 | 1..144 | 249 | 45.9 | Plus |
| CG13041-PA | 124 | CG13041-PA | 1..124 | 1..144 | 236 | 45.5 | Plus |
| CG13059-PA | 155 | CG13059-PA | 1..154 | 1..144 | 234 | 39.4 | Plus |
