Clone BS28743 Report

Search the DGRC for BS28743

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:287
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG33299-RC
Protein status:BS28743.pep: gold
Sequenced Size:551

Clone Sequence Records

BS28743.complete Sequence

551 bp assembled on 2012-03-26

GenBank Submission: KX800704

> BS28743.complete
GAAGTTATCAGTCGACATGTGGAGATTCCTTCTGATTTGTAGTATTCAGC
TGATTTGCGCATCAGAGCATAGTGGCGAAGGATATGGCGATGGTTACGGA
TACGGCGGAAGCGGAGGCGGCGGCAGTGGATCACTAGGCAGCGGCGGAGG
AGGCGATGGCCACTTTCACCACCACACACCCACCACGTACTCGGAGATCT
CGAAGCATGTGCCGGTGCATGTGATCGAAAAGGTGCCACTGCCCATTCCC
CATCCGGTCGCCGTTCAGGTGCCCAACGTAATTCGGCTTCAAATTCCGGA
ACCCTATGCCGTCCACGTGCCCGTCCAGCAGGAGATCCATGTGCCGGTGT
ATAAAATAGTGCCCGAAATAACCGAAAAGAAGATACCCTACACCGTCGAG
AAGCCATACCCCGTCGAGGTGGAGAAACCTTATCCCGTCGAGGTGATTAA
GCAGATCAAGATCCCGGTGCCTAAGCCCTATCCTGTTCCGTTTACCATCT
ACAAACACGTCCTGCAAAAGGAGCACGGCTGGTGAAAGCTTTCTAGACCA
T

BS28743.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG33299-RC 519 CG33299-PC 1..519 17..535 2595 100 Plus
CG33299-RB 582 CG33299-PB 76..582 29..535 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG33299-RC 762 CG33299-RC 46..564 17..535 2595 100 Plus
CG33299-RB 825 CG33299-RB 121..627 29..535 2535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9656720..9657226 29..535 2535 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:17:33 has no hits.

BS28743.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:48 Download gff for BS28743.complete
Subject Subject Range Query Range Percent Splice Strand
CG33299-RC 46..563 17..534 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:30 Download gff for BS28743.complete
Subject Subject Range Query Range Percent Splice Strand
CG33299-RC 46..563 17..534 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:24:44 Download gff for BS28743.complete
Subject Subject Range Query Range Percent Splice Strand
CG33299-RC 46..563 17..534 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:24:44 Download gff for BS28743.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9656720..9657225 29..534 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:30 Download gff for BS28743.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9656720..9657225 29..534 100   Plus

BS28743.pep Sequence

Translation from 16 to 534

> BS28743.pep
MWRFLLICSIQLICASEHSGEGYGDGYGYGGSGGGGSGSLGSGGGGDGHF
HHHTPTTYSEISKHVPVHVIEKVPLPIPHPVAVQVPNVIRLQIPEPYAVH
VPVQQEIHVPVYKIVPEITEKKIPYTVEKPYPVEVEKPYPVEVIKQIKIP
VPKPYPVPFTIYKHVLQKEHGW*

BS28743.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG33299-PC 172 CG33299-PC 1..172 1..172 950 100 Plus
CG33299-PB 193 CG33299-PB 26..193 5..172 923 100 Plus
CG7031-PC 474 CG7031-PC 317..473 15..172 252 34.4 Plus
CG7031-PB 475 CG7031-PB 318..474 15..172 252 34.4 Plus
CG7031-PA 475 CG7031-PA 318..474 15..172 252 34.4 Plus