Clone BS28746 Report

Search the DGRC for BS28746

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:287
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG34214-RA
Protein status:BS28746.pep: full length peptide match
Sequenced Size:479

Clone Sequence Records

BS28746.complete Sequence

479 bp assembled on 2012-03-26

GenBank Submission: KX804571

> BS28746.complete
GAAGTTATCAGTCGACATGGCTCCTCGAGAGAAAGTTGAATTTGTGCTGG
TGCGCCTGGCCTTTGTTCCTTACATAAATCCTCTGTACCCGCGCATCAGC
TACCAGATCAGAAAGCACGCTCCCACCGGATCGATTATCCAAGTGCGCGA
TTGGTTCGAGCATGTGATGATGAGGGAGCGCTCCAAGCTGCCCCCAGATG
CTAACATACGCTACGCAGAGTGGCGCATCATCACCGGCGACATGGAGCTG
TTTCAGGTGCAGGGCGTCCGCTTCGACAAGATCATGCTGGTGCTGGGCGA
AGAAAACATCTCGTGGGTCTTCTATCAGAACACGCCACTTTTCCGCCGTA
TCGAGGGCAGCGCCTGCTTCCCTGTTAGCTACTGCGGATGCTGCCTGAAC
AACCAGTACCTGGATATTATGGCCAAAATCAAGCAAACTGTGTCGAGGAA
AAAGATACGATGAAAGCTTTCTAGACCAT

BS28746.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG34214-RA 447 CG34214-PA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG34214-RA 537 CG34214-RA 67..515 17..465 2245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24665449..24665838 465..76 1950 100 Minus
2R 25286936 2R 24665898..24665956 75..17 295 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:17:05 has no hits.

BS28746.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:43 Download gff for BS28746.complete
Subject Subject Range Query Range Percent Splice Strand
CG34214-RA 65..510 17..462 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:19 Download gff for BS28746.complete
Subject Subject Range Query Range Percent Splice Strand
CG34214-RA 67..512 17..462 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:24:32 Download gff for BS28746.complete
Subject Subject Range Query Range Percent Splice Strand
CG34214-RA 67..512 17..462 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:24:32 Download gff for BS28746.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24665452..24665838 76..462 100 <- Minus
2R 24665898..24665956 17..75 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:19 Download gff for BS28746.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20552975..20553361 76..462 100 <- Minus
arm_2R 20553421..20553479 17..75 100   Minus

BS28746.pep Sequence

Translation from 16 to 462

> BS28746.pep
MAPREKVEFVLVRLAFVPYINPLYPRISYQIRKHAPTGSIIQVRDWFEHV
MMRERSKLPPDANIRYAEWRIITGDMELFQVQGVRFDKIMLVLGEENISW
VFYQNTPLFRRIEGSACFPVSYCGCCLNNQYLDIMAKIKQTVSRKKIR*

BS28746.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG34214-PA 148 CG34214-PA 1..148 1..148 787 100 Plus