Clone BS28753 Report

Search the DGRC for BS28753

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:287
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG42815-RA
Protein status:BS28753.pep: gold
Sequenced Size:338

Clone Sequence Records

BS28753.complete Sequence

338 bp assembled on 2012-03-26

GenBank Submission: KX800904

> BS28753.complete
GAAGTTATCAGTCGACATGAAGCTACTTCTTCCTTTGACTTTGGCAGTGA
TTGCCATTTGCTGCATGTCCTTTATTGAGTGCGCCTCGTCGGGCGACACA
GCAACCAAAACTGGGACAGGCACTGGAACTGGAACTGGTACCGGCACCGG
CACCGGCACCGGAACAGCCACCACATCGACAACTGTTGCTCCAACAACCA
CCTCTACCACGACCGCAGAAGCGACCGTGCACCACAGAAGGATACATCGG
CGCAGGCGTCGCAACCTAAGGAGACTCCGACACAGGCGCGCAGAGGCCGA
GCGAAGACGCCGATTGGGCTAGAAGCTTTCTAGACCAT

BS28753.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG42815-RA 306 CG42815-PA 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG42815-RA 408 CG32186-RA 26..331 17..322 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17791156..17791461 322..17 1530 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:18:05 has no hits.

BS28753.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:52 Download gff for BS28753.complete
Subject Subject Range Query Range Percent Splice Strand
CG42815-RA 1..306 17..322 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:48 Download gff for BS28753.complete
Subject Subject Range Query Range Percent Splice Strand
CG42815-RA 26..331 17..322 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:24:59 Download gff for BS28753.complete
Subject Subject Range Query Range Percent Splice Strand
CG42815-RA 26..331 17..322 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:24:59 Download gff for BS28753.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17791156..17791461 17..322 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:48 Download gff for BS28753.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17784256..17784561 17..322 100   Minus

BS28753.pep Sequence

Translation from 16 to 321

> BS28753.pep
MKLLLPLTLAVIAICCMSFIECASSGDTATKTGTGTGTGTGTGTGTGTGT
ATTSTTVAPTTTSTTTAEATVHHRRIHRRRRRNLRRLRHRRAEAERRRRL
G*

BS28753.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG42815-PA 101 CG32186-PA 1..101 1..101 517 100 Plus
CG32073-PB 109 CG32073-PB 1..108 1..99 214 46.8 Plus
CG32073-PA 109 CG32073-PA 1..108 1..99 214 46.8 Plus
CG32453-PB 120 CG32453-PB 1..104 1..100 138 35.2 Plus
CG32453-PA 120 CG32453-PA 1..104 1..100 138 35.2 Plus