Clone BS28754 Report

Search the DGRC for BS28754

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:287
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG32198-RB
Protein status:BS28754.pep: gold
Sequenced Size:443

Clone Sequence Records

BS28754.complete Sequence

443 bp assembled on 2012-03-26

GenBank Submission: KX800260

> BS28754.complete
GAAGTTATCAGTCGACATGTGTTCCAAACTAACTCTTTTCCTGGGGTTAG
TGGCCCTCATTGCTGCTGTCTTTGCTCTTGATGATCCCACATCGCCGACA
TCCCCAACATCTCCAACATCTCCAACTTCGCCGACTTCTCCAACTTCGCC
GACTTCTCCAACTTCTCCCACTTCTCCTACATCACCAACTTCACCAACAA
CGCCAGATGCCTCTACTGCCACCACTGCCGCCCCCTCTACGGCATCCACT
ACCACAGAAAGGACTCGCAGACGCAGGCGCAGGCGCAGGATAATCCGGAT
CCGCAGGTTCAGGGGCGGCAACCGCCGTCGTGGATTCGGTAGACGCAGAT
TCGGTGGTCGCCGGTTCGGTGAGGGAGGTGTCCGTGAAGTCGTGATCCGT
GAGCGCGGATTGGAGCGCCTCCTTTAAAAGCTTTCTAGACCAT

BS28754.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32198-RB 411 CG32198-PB 1..411 17..427 2055 100 Plus
CG15741-RA 408 CG15741-PA 109..161 125..177 175 88.7 Plus
CG15741-RA 408 CG15741-PA 121..167 119..165 175 91.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG32198-RB 470 CG32198-RB 15..425 17..427 2055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18526990..18527400 17..427 2055 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:18:08 has no hits.

BS28754.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:53 Download gff for BS28754.complete
Subject Subject Range Query Range Percent Splice Strand
CG32198-RB 1..409 17..425 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:50 Download gff for BS28754.complete
Subject Subject Range Query Range Percent Splice Strand
CG32198-RB 15..423 17..425 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:00 Download gff for BS28754.complete
Subject Subject Range Query Range Percent Splice Strand
CG32198-RB 15..423 17..425 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:00 Download gff for BS28754.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18526990..18527398 17..425 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:50 Download gff for BS28754.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18520090..18520498 17..425 100   Plus

BS28754.pep Sequence

Translation from 16 to 426

> BS28754.pep
MCSKLTLFLGLVALIAAVFALDDPTSPTSPTSPTSPTSPTSPTSPTSPTS
PTSPTSPTSPTTPDASTATTAAPSTASTTTERTRRRRRRRRIIRIRRFRG
GNRRRGFGRRRFGGRRFGEGGVREVVIRERGLERLL*

BS28754.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG32198-PB 136 CG32198-PB 1..136 1..136 691 100 Plus
CG12522-PA 137 CG12522-PA 5..132 5..134 198 45.2 Plus
CG15741-PA 135 CG15741-PA 6..107 12..105 187 42.2 Plus
CG32071-PA 150 CG32071-PA 15..149 5..134 184 44.4 Plus
CG15741-PA 135 CG15741-PA 7..106 7..105 173 43 Plus
nol-PA 130 CG32077-PA 1..120 1..116 172 33.1 Plus