BS28762.complete Sequence
1193 bp assembled on 2012-03-26
GenBank Submission: KX804278
> BS28762.complete
GAAGTTATCAGTCGACATGCAGGGCCCAATTCAAAGGTTGGTGTACACAT
TTGGTCATCGCACCTGTAGCCAATTGCCGATGATCGGCGGAGCAACGATA
TCCCAAACAAAACCAACAACAATGGCTCTCTCCGTTCGCCAATCCTCCTC
CTCCGTGCTGGCCACGGAGTCCTCTAACAAGGGAATGATTATTCTGAACC
GGCCCAAGGCGCTTAACGCCATCAACTTGGAGATGGTACGCAAGATCTAC
AAGCACCTGAAGAAGTGCGAGAAGTCCAAGTCGCTGGTGATCATCAAGGG
CACAGGTGACAAGGCCTTCTGCGCCGGTGGAGATGTGCGCGCTCTGGTCG
AGGCTGGCCCTACGGATGAGTCGAAGAGCTTCTTCCGGGAGGAGTACAGC
ACGAATGCCCTGATCGGAAACTATAAGATTCCCTACATCGCCATCATTGA
CGGTATTACCATGGGCGGTGGCGTGGGTCTGAGTGTGCATGGCAAGTACC
GGGTGGCCAGCGATCGGACACTGTTCGCCATGCCCGAGACGGCGATTGGC
CTCTTCCCGGATGTGGGTGGATCATACTTCCTGCCTCGACTGCAGGGAAA
GCTGGGCCTCTATCTGGGTCTCACAGGATATCGACTGCGCGGAGCCGATG
TCTATTACTCAGGCATTGCTACGCACTACTGCGAGAGCAGCAAGATCCCT
GATCTGGAGACGGCTCTCCTTAACTGCCCGGATGCGGATGATGTTCCTGA
GCTGCTGCAGAAGTACCATTCCCCGCCAGAAAAGCCCTTCTCGCTGCAGC
CTGTCCTGGAGCAGATCAACAAGAATTTTTCAGCGGACTCGGTGGAGGGG
ATTCTAGAGAATCTGCAGAACGATGGCAGTGAATGGGCCAAGAAGACGCT
TGAGACGCTCTCGAAGATGTCTCCCACCTCGATGAAGGTTACGTTCCGTC
AGTTGGAGCTCGGATCACAGCTGTCGCTGGCTCAGTGTCTTATTATGGAA
TATCGTCTGGCCGTGCGTCATCTGGAGCGAAGTGATTTCAAGGAGGGAGT
GCGCGCCCTACTCATCGACAAGGATCAGAAGCCCCAGTGGCAGCCAACCA
AGCTGGCCGATGTTACTGAGGAACATGTGCAGTGGTTTTTCCGCAAGCTG
CCGGACACCGAGGAACTCAAGCTGTAAAAGCTTTCTAGACCAT
BS28762.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5044-RB | 1161 | CG5044-PB | 1..1161 | 17..1177 | 5745 | 99.7 | Plus |
| CG5044-RA | 1158 | CG5044-PA | 3..1158 | 22..1177 | 5720 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5044-RB | 1702 | CG5044-RB | 90..1250 | 17..1177 | 5745 | 99.7 | Plus |
| CG5044-RA | 1699 | CG5044-RA | 92..1247 | 22..1177 | 5720 | 99.7 | Plus |
| ldlCp-RA | 3015 | CG6177-RA | 2685..2959 | 1177..903 | 1345 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:18:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15357389..15358274 | 19..904 | 4400 | 99.8 | Plus |
| 3R | 32079331 | 3R | 15358537..15358811 | 903..1177 | 1345 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:18:32 has no hits.
BS28762.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:57 Download gff for
BS28762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5044-RB | 74..1232 | 17..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:04 Download gff for
BS28762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5044-RB | 90..1248 | 17..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:10 Download gff for
BS28762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5044-RB | 90..1248 | 17..1175 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:10 Download gff for
BS28762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15357388..15358274 | 17..904 | 99 | -> | Plus |
| 3R | 15358539..15358809 | 905..1175 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:04 Download gff for
BS28762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11183110..11183996 | 17..904 | 99 | -> | Plus |
| arm_3R | 11184261..11184531 | 905..1175 | 99 | | Plus |
BS28762.pep Sequence
Translation from 16 to 1176
> BS28762.pep
MQGPIQRLVYTFGHRTCSQLPMIGGATISQTKPTTMALSVRQSSSSVLAT
ESSNKGMIILNRPKALNAINLEMVRKIYKHLKKCEKSKSLVIIKGTGDKA
FCAGGDVRALVEAGPTDESKSFFREEYSTNALIGNYKIPYIAIIDGITMG
GGVGLSVHGKYRVASDRTLFAMPETAIGLFPDVGGSYFLPRLQGKLGLYL
GLTGYRLRGADVYYSGIATHYCESSKIPDLETALLNCPDADDVPELLQKY
HSPPEKPFSLQPVLEQINKNFSADSVEGILENLQNDGSEWAKKTLETLSK
MSPTSMKVTFRQLELGSQLSLAQCLIMEYRLAVRHLERSDFKEGVRALLI
DKDQKPQWQPTKLADVTEEHVQWFFRKLPDTEELKL*
BS28762.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5044-PB | 386 | CG5044-PB | 1..386 | 1..386 | 1991 | 100 | Plus |
| CG5044-PA | 385 | CG5044-PA | 2..385 | 3..386 | 1981 | 100 | Plus |
| CG6543-PA | 295 | CG6543-PA | 45..215 | 48..219 | 205 | 31.6 | Plus |
| CG6543-PB | 295 | CG6543-PB | 45..215 | 48..219 | 205 | 31.6 | Plus |
| CG8778-PA | 299 | CG8778-PA | 51..225 | 57..229 | 174 | 28.4 | Plus |
