BS28764.complete Sequence
1952 bp assembled on 2012-04-06
GenBank Submission: KX803388
> BS28764.complete
GAAGTTATCAGTCGACATGTCCTCACCACTGGTCCTTTTCACAGCGCTCC
TCCTGGTCAGCAGCACAATATGCCAGGGCCTGCCAGATTTGCACAAACAA
ATGACGCCGGAGCAGCTGCAGTCAGTCTTCCACGTGGACACCCACGACGC
AGTGCCCCACTATGAGCTCGTGCAGCTCCAGCACCACGAGAACAACCACA
ACCGCCGGCGGCGGAGCATCGGCAAGGGACCAAAGGTCAACGCCGCCCTG
CCGCCCCACCACGTGAAAAAGGATCTCAGCAAGAACGCCTACTACAGCGA
ACTGAAGCACGAGGCTCTCGCCTCGGGCGGCAACCACCTGTTCGCCCCGG
AAGTGAGTGCCATCAAGTCGCACAACGTCTCGTTCAGCGCCTTCGGCCAG
CACCTGAACCTCTCCCTCCGCGCCACCCAAGGACTCTTCAAGGGCGCGCC
CCACCAGCTGCGCATGTGGACCGTGGGCAGTGAGCCCAATGCCACCCACG
GCCTTGACCTCCAGGAGATTGTCCACGAGCAGCACACCAGCAACGATGTG
GGCGAAGTTTTCCAGGACGAGAAGAACATGGCCGCGATCTTGATGCGGCG
CCACATGGAAACCGGCGACCTGATAATGGAGGGCAGCATTGGACACGACC
TGGTGATCAAGCCCTTGCCGCACGAACTGAGTCCCAATCCGGAGGAGTCG
CACCACATCATCTACAAGCGGGAGGCATCCGCAGCAGAAGGCCAACTGAG
TGACTTTGCCTTCATGGAACCTGATGATCTGCTCGCCAGCGAGAAGCTCG
AGCGGTTGCAGCGCCGCCAGCGTCGCAGCAGACGCAGTGCACCCAGCAGT
CCCGATTTCGAGGACCTCAACGACGAGGACGAAGGCGCCCTGGACGGAGA
GCCCCAAGTGGCCGAGTCTCGCACCAGATCCCGCCGTCAGGCTCCCTATA
TCATCTATCCGGAGGTCTTGGTCATCGTGGACTACGATGGCTATCGGCTC
CATGGCGGCGATAATCTGCAGGTCAAACGCTACTTCATCTCATTCTGGAA
CGGAGTCGATCTGCGCTACCGCCTACTAAAGGGTCCCAGAATCCGCATCA
GTATCGCCGGCATAATCATTTCGCGGGGTCGTGATGCCACTCCCTATCTG
GAACGCAATCGAGTGGGTCGGGATGCCATCGATTCGGCCGCTGCTCTCAC
GGACATGGGAAAGTATCTGTTCCGGGAACGCCGACTTCCGGTCTACGACA
TTGCCGTGGCCATAACCAAACTCGATATGTGCCGTCGCACCTCCGCTTAT
GGTGAATGTAATCGCGGTACCGCAGGCTTCGCTTACGTCGGCGGCGCATG
CGTGGTGAACAAGCGACTGGAGAAGGTGAACAGCGTGGCCATCATCGAGG
ACACCGGCGGCTTCAGCGGCATCATCGTGGCTGCCCACGAAGTTGGACAT
CTGTTGGGAGCGGTGCACGACGGTTCGCCACCGCCCAGCTACTTGGGCGG
ACCGGGCGCCCAGCGGTGTCGCTGGGAGGATGGCTACATCATGTCCGATC
TGCGTCACACGGAGCGGGGTTTCCGATGGTCCGCCTGCACGGTGCAGAGC
TTCCACCACTTCCTCAATGGAGACACGGCCACCTGCCTGCACAACGCCCC
TCATGAGGACAGCGCCCTGGGTAGATCTCTGCCAGGAACCCTGCTCTCGC
TGGACGCCCAGTGCCGCAGAGATCGGGGAACGTATGCCTGCTTCAAGGAT
GAGCGAGTGTGTGCCCAGCTCTTCTGCTTCGACGCCCAGACGGGATACTG
TGTGGCCTACAGGCCAGCGGCCGAAGGATCGGCCTGCGGAAATGGTTATC
ACTGTCTGGATGGTCGTTGTACACCACTGCCCTCGAACATCATTCCCGAT
TACGGACACAACTATCGTTTAGTCTACAATGGTTAAAAGCTTTCTAGACC
AT
BS28764.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9850-RA | 1920 | CG9850-PA | 1..1920 | 17..1936 | 9600 | 100 | Plus |
| CG9850-RC | 3309 | CG9850-PC | 1..1914 | 17..1930 | 9570 | 100 | Plus |
| CG9850-RF | 1917 | CG9850-PF | 1..1917 | 17..1936 | 9115 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:27:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9850-RA | 3588 | CG9850-RA | 1052..2971 | 17..1936 | 9600 | 100 | Plus |
| CG9850-RC | 5497 | CG9850-RC | 1052..2965 | 17..1930 | 9570 | 100 | Plus |
| CG9850-RF | 3585 | CG9850-RF | 1052..2968 | 17..1936 | 9115 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23785912..23786355 | 532..89 | 2220 | 100 | Minus |
| 2R | 25286936 | 2R | 23768143..23768408 | 1023..758 | 1330 | 100 | Minus |
| 2R | 25286936 | 2R | 23757695..23757926 | 1849..1618 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 23757987..23758151 | 1617..1453 | 825 | 100 | Minus |
| 2R | 25286936 | 2R | 23760853..23760996 | 1269..1126 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 23758474..23758604 | 1454..1324 | 655 | 100 | Minus |
| 2R | 25286936 | 2R | 23768947..23769077 | 758..628 | 655 | 100 | Minus |
| 2R | 25286936 | 2R | 23767334..23767442 | 1127..1019 | 545 | 100 | Minus |
| 2R | 25286936 | 2R | 23779015..23779115 | 629..529 | 505 | 100 | Minus |
| 2R | 25286936 | 2R | 23757415..23757494 | 1929..1850 | 400 | 100 | Minus |
| 2R | 25286936 | 2R | 23791996..23792067 | 88..17 | 360 | 100 | Minus |
| 2R | 25286936 | 2R | 23759725..23759781 | 1326..1270 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:27:13 has no hits.
BS28764.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 13:47:03 Download gff for
BS28764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9850-RA | 374..2291 | 17..1934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:13 Download gff for
BS28764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9850-RA | 1052..2969 | 17..1934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:06 Download gff for
BS28764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9850-RA | 1052..2969 | 17..1934 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:06 Download gff for
BS28764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23757407..23757494 | 1850..1934 | 96 | <- | Minus |
| 2R | 23757695..23757926 | 1618..1849 | 100 | <- | Minus |
| 2R | 23757987..23758151 | 1453..1617 | 100 | <- | Minus |
| 2R | 23758476..23758602 | 1326..1452 | 100 | <- | Minus |
| 2R | 23759726..23759781 | 1270..1325 | 100 | <- | Minus |
| 2R | 23760853..23760995 | 1127..1269 | 100 | <- | Minus |
| 2R | 23767335..23767439 | 1022..1126 | 100 | <- | Minus |
| 2R | 23768145..23768407 | 759..1021 | 100 | <- | Minus |
| 2R | 23768947..23769076 | 629..758 | 100 | <- | Minus |
| 2R | 23779016..23779111 | 533..628 | 100 | <- | Minus |
| 2R | 23785912..23786355 | 89..532 | 100 | <- | Minus |
| 2R | 23791996..23792067 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:13 Download gff for
BS28764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19648376..19648518 | 1127..1269 | 100 | <- | Minus |
| arm_2R | 19654858..19654962 | 1022..1126 | 100 | <- | Minus |
| arm_2R | 19645999..19646125 | 1326..1452 | 100 | <- | Minus |
| arm_2R | 19644930..19645017 | 1850..1934 | 96 | <- | Minus |
| arm_2R | 19645218..19645449 | 1618..1849 | 100 | <- | Minus |
| arm_2R | 19645510..19645674 | 1453..1617 | 100 | <- | Minus |
| arm_2R | 19647249..19647304 | 1270..1325 | 100 | <- | Minus |
| arm_2R | 19655668..19655930 | 759..1021 | 100 | <- | Minus |
| arm_2R | 19656470..19656599 | 629..758 | 100 | <- | Minus |
| arm_2R | 19666539..19666634 | 533..628 | 100 | <- | Minus |
| arm_2R | 19673435..19673878 | 89..532 | 100 | <- | Minus |
| arm_2R | 19679519..19679590 | 17..88 | 100 | | Minus |
BS28764.pep Sequence
Translation from 16 to 1935
> BS28764.pep
MSSPLVLFTALLLVSSTICQGLPDLHKQMTPEQLQSVFHVDTHDAVPHYE
LVQLQHHENNHNRRRRSIGKGPKVNAALPPHHVKKDLSKNAYYSELKHEA
LASGGNHLFAPEVSAIKSHNVSFSAFGQHLNLSLRATQGLFKGAPHQLRM
WTVGSEPNATHGLDLQEIVHEQHTSNDVGEVFQDEKNMAAILMRRHMETG
DLIMEGSIGHDLVIKPLPHELSPNPEESHHIIYKREASAAEGQLSDFAFM
EPDDLLASEKLERLQRRQRRSRRSAPSSPDFEDLNDEDEGALDGEPQVAE
SRTRSRRQAPYIIYPEVLVIVDYDGYRLHGGDNLQVKRYFISFWNGVDLR
YRLLKGPRIRISIAGIIISRGRDATPYLERNRVGRDAIDSAAALTDMGKY
LFRERRLPVYDIAVAITKLDMCRRTSAYGECNRGTAGFAYVGGACVVNKR
LEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPSYLGGPGAQR
CRWEDGYIMSDLRHTERGFRWSACTVQSFHHFLNGDTATCLHNAPHEDSA
LGRSLPGTLLSLDAQCRRDRGTYACFKDERVCAQLFCFDAQTGYCVAYRP
AAEGSACGNGYHCLDGRCTPLPSNIIPDYGHNYRLVYNG*
BS28764.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9850-PA | 639 | CG9850-PA | 1..639 | 1..639 | 3405 | 100 | Plus |
| CG9850-PC | 1102 | CG9850-PC | 1..638 | 1..638 | 3399 | 100 | Plus |
| CG9850-PF | 638 | CG9850-PF | 1..638 | 1..639 | 3353 | 98.7 | Plus |
| CG9850-PE | 896 | CG9850-PE | 1..637 | 1..638 | 3347 | 98.7 | Plus |
| CG9850-PD | 913 | CG9850-PD | 1..637 | 1..638 | 3347 | 98.7 | Plus |
