Clone BS28765 Report

Search the DGRC for BS28765

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:287
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG42568-RA
Protein status:BS28765.pep: full length peptide match
Sequenced Size:365

Clone Sequence Records

BS28765.complete Sequence

365 bp assembled on 2012-03-26

GenBank Submission: KX800189

> BS28765.complete
GAAGTTATCAGTCGACATGAAGTCAACTATTCAAATCGGCACCCTGTGCA
TCGTGGTGCTCGTGATCTGCTGCCTGGACTTCTCCAGTTCACAGAACTCC
TCCTCCACTTCCACCAGTCCCACCTACAGCTCGTCCAGCACGCCCAAGAA
AGTGTACCTGTCCAACTTGACGTACTCGATTGTGAGGAAGATCCGTGTGG
GCACCACCACCGCCAGCAGCACCAGCCGTAGTTCCAGGACCAGGAGCAAC
CGGAAACTGAACGCCAAGAAGACCCAGGCCAAACGGAGCCAGGCCAAGCG
CTCCGGCAAGAACAGGAAGTCGAACTCCCGCCGTGCCAGCAGGGGCTAAA
AGCTTTCTAGACCAT

BS28765.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG42568-RB 333 CG42568-PB 1..333 17..349 1665 100 Plus
CG42568-RA 333 CG42568-PA 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
DnaJ-60-RC 1472 CG42567-RC 1025..1359 15..349 1675 100 Plus
CG42568-RB 1472 CG42568-RB 1025..1359 15..349 1675 100 Plus
CG42568-RA 1468 CG42568-RA 1021..1355 15..349 1675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24157781..24158115 349..15 1675 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:18:36 has no hits.

BS28765.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:57 Download gff for BS28765.complete
Subject Subject Range Query Range Percent Splice Strand
CG42568-RB 1011..1341 17..347 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:06 Download gff for BS28765.complete
Subject Subject Range Query Range Percent Splice Strand
CG42568-RA 1023..1353 17..347 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:11 Download gff for BS28765.complete
Subject Subject Range Query Range Percent Splice Strand
CG42568-RA 1023..1353 17..347 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:11 Download gff for BS28765.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24157783..24158113 17..347 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:06 Download gff for BS28765.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20045306..20045636 17..347 100   Minus

BS28765.pep Sequence

Translation from 16 to 348

> BS28765.pep
MKSTIQIGTLCIVVLVICCLDFSSSQNSSSTSTSPTYSSSSTPKKVYLSN
LTYSIVRKIRVGTTTASSTSRSSRTRSNRKLNAKKTQAKRSQAKRSGKNR
KSNSRRASRG*

BS28765.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG42568-PB 110 CG42568-PB 1..110 1..110 535 100 Plus
CG42568-PA 110 CG42568-PA 1..110 1..110 535 100 Plus
CG34273-PA 128 CG34273-PA 40..124 23..105 165 49.4 Plus