Clone BS28767 Report

Search the DGRC for BS28767

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:287
Well:67
Vector:pDNR-Dual
Associated Gene/Transcriptrobl62A-RA
Protein status:BS28767.pep: full length peptide match
Sequenced Size:347

Clone Sequence Records

BS28767.complete Sequence

347 bp assembled on 2012-03-26

GenBank Submission: KX801120

> BS28767.complete
GAAGTTATCAGTCGACATGTCGAAAATTTATCTGAAGGCCATGGAGGATG
TGGTGCAGCGAAACACGGACAACACAAACCGGATTACGGAGCAGGCGCAG
GGATTCGTGGTGTCGGAAAATGCCGGGGACAGTCTGCTGCACACTTCATT
CGATTTGACCACGGCCCAGTCGATTGTGAAGCACCTGCACGCCAGTTTCC
TGAAATTGGCCCAGAGCTGCGTCCGTGATCTGGATACCGATGATAAGCTG
TGCTTTCTGCGCGTGAAAACCCGCAAGCACGAATTCCTGGTTAGTCCAGA
GGAAGCCTTCACTGTGACCGTGGTATTGTAAAAGCTTTCTAGACCAT

BS28767.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
robl62A-RB 315 CG1014-PB 1..315 17..331 1575 100 Plus
robl62A-RA 315 CG1014-PA 1..315 17..331 1575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
robl62A-RB 591 CG1014-RB 103..417 17..331 1575 100 Plus
robl62A-RA 751 CG1014-RA 103..417 17..331 1575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1477721..1478035 17..331 1575 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:18:39 has no hits.

BS28767.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:58 Download gff for BS28767.complete
Subject Subject Range Query Range Percent Splice Strand
robl62A-RA 103..415 17..329 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:07 Download gff for BS28767.complete
Subject Subject Range Query Range Percent Splice Strand
robl62A-RA 103..415 17..329 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:13 Download gff for BS28767.complete
Subject Subject Range Query Range Percent Splice Strand
robl62A-RA 103..415 17..329 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:13 Download gff for BS28767.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1477721..1478033 17..329 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:07 Download gff for BS28767.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1477721..1478033 17..329 100   Plus

BS28767.pep Sequence

Translation from 16 to 330

> BS28767.pep
MSKIYLKAMEDVVQRNTDNTNRITEQAQGFVVSENAGDSLLHTSFDLTTA
QSIVKHLHASFLKLAQSCVRDLDTDDKLCFLRVKTRKHEFLVSPEEAFTV
TVVL*

BS28767.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
robl62A-PB 104 CG1014-PB 1..104 1..104 523 100 Plus
robl62A-PA 104 CG1014-PA 1..104 1..104 523 100 Plus
CG31275-PA 101 CG31275-PA 3..100 7..103 243 49 Plus