BS28777.complete Sequence
1478 bp assembled on 2012-03-26
GenBank Submission: KX802512
> BS28777.complete
GAAGTTATCAGTCGACATGAGCGGACAAGCGGATATTGCCCTCATCGGCC
TGGCCGTCATGGGCCAAAACCTGATACTCAACATGGACGAGAAGGGATTC
GTGGTGTGCGCCTACAACCGCACGGTGGCCAAGGTCAAGGAGTTCCTCGC
CAATGAGGCTAAGGACACCAAAGTGATTGGAGCCGACTCGCTCGAGGACA
TGGTCTCCAAGCTGAAGAGCCCCCGGAAGGTCATGCTGCTGGTCAAGGCT
GGAAGTGCAGTCGACGACTTCATCCAGCAGCTGGTGCCGCTGCTTTCCGC
CGGCGATGTGATCATCGATGGTGGCAACTCGGAGTATCAGGACACATCTC
GCCGCTGCGACGAGTTAGCCAAACTTGGCCTGCTCTTCGTCGGATCCGGC
GTGAGCGGTGGCGAGGAGGGCGCCCGCCACGGACCCTCGCTGATGCCCGG
CGGACACGAGGCCGCGTGGCCCCTTATCCAACCCATCTTCCAGGCGATCT
GCGCCAAGGCCGACGGTGAACCCTGCTGCGAGTGGGTGGGCGATGGAGGC
GCCGGTCACTTCGTCAAGATGGTGCACAACGGCATCGAATACGGTGACAT
GCAGCTGATCTGCGAGGCGTACCACATCATGCAGAGCCTGGGACTGTCGG
CTGACCAGATGGCAGACGAGTTCGGCAAGTGGAACTCGGCCGAACTGGAC
TCCTTCCTCATTGAAATCACGCGTGATATTCTTAAGTACAAGGACGGCAA
AGGTTATCTGCTGGAGCGGATTCGCGATACCGCCGGCCAGAAGGGCACGG
GCAAGTGGACGGCAATCGCTGCTCTGCAGTATGGAGTGCCTGTGACGCTA
ATTGGCGAGGCGGTCTTCTCGCGATGCCTGTCTGCCCTGAAGGACGAGCG
CGTCCAGGCCAGCAGCGTGCTGAAGGGACCCTCGACCAAGGCGCAAGTGG
CCAACCTCACCAAGTTCCTCGACGACATCAAGCACGCTCTCTACTGCGCC
AAGATCGTGTCCTACGCCCAGGGATTCATGCTCATGCGAGAGGCGGCCAG
GGAGAACAAGTGGAGACTTAATTACGGCGGCATTGCGCTGATGTGGCGCG
GCGGCTGCATCATCCGCAGCGTCTTTCTGGGCAACATTAAGGACGCGTAT
ACGTCGCAGCCGGAGCTGTCTAATCTGCTGCTGGACGACTTCTTCAAGAA
GGCCATCGAGCGCGGCCAGGACTCGTGGCGCGAGGTGGTGGCCAATGCCT
TCCGCTGGGGCATTCCCGTGCCGGCCCTGTCTACCGCCCTAAGCTTCTAC
GACGGCTACCGCACGGCCAAGCTGCCAGCCAACTTGCTGCAGGCCCAGAG
GGATTACTTCGGCGCCCACACCTATGAGCTGCTGGGCCAGGAGGGTCAGT
TCCACCACACGAACTGGACAGGCACCGGCGGCAATGTGTCCGCCAGCACC
TACCAGGCGTAGAAGCTTTCTAGACCAT
BS28777.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgd-RB | 1446 | CG3724-PB | 1..1446 | 17..1462 | 7230 | 100 | Plus |
| Pgd-RA | 1446 | CG3724-PA | 1..1446 | 17..1462 | 7230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgd-RB | 1668 | CG3724-RB | 43..1490 | 15..1462 | 7240 | 100 | Plus |
| Pgd-RA | 1895 | CG3724-RA | 270..1717 | 15..1462 | 7240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:18:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2147174..2148388 | 248..1462 | 6075 | 100 | Plus |
| X | 23542271 | X | 2145489..2145713 | 24..248 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:18:46 has no hits.
BS28777.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:59 Download gff for
BS28777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgd-RA | 272..1717 | 17..1462 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:12 Download gff for
BS28777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgd-RA | 272..1717 | 17..1462 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:17 Download gff for
BS28777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgd-RA | 272..1717 | 17..1462 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:17 Download gff for
BS28777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2145489..2145713 | 24..248 | 100 | -> | Plus |
| X | 2147175..2148388 | 249..1462 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:12 Download gff for
BS28777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2039522..2039746 | 24..248 | 100 | -> | Plus |
| arm_X | 2041208..2042421 | 249..1462 | 100 | | Plus |
BS28777.pep Sequence
Translation from 16 to 1461
> BS28777.pep
MSGQADIALIGLAVMGQNLILNMDEKGFVVCAYNRTVAKVKEFLANEAKD
TKVIGADSLEDMVSKLKSPRKVMLLVKAGSAVDDFIQQLVPLLSAGDVII
DGGNSEYQDTSRRCDELAKLGLLFVGSGVSGGEEGARHGPSLMPGGHEAA
WPLIQPIFQAICAKADGEPCCEWVGDGGAGHFVKMVHNGIEYGDMQLICE
AYHIMQSLGLSADQMADEFGKWNSAELDSFLIEITRDILKYKDGKGYLLE
RIRDTAGQKGTGKWTAIAALQYGVPVTLIGEAVFSRCLSALKDERVQASS
VLKGPSTKAQVANLTKFLDDIKHALYCAKIVSYAQGFMLMREAARENKWR
LNYGGIALMWRGGCIIRSVFLGNIKDAYTSQPELSNLLLDDFFKKAIERG
QDSWREVVANAFRWGIPVPALSTALSFYDGYRTAKLPANLLQAQRDYFGA
HTYELLGQEGQFHHTNWTGTGGNVSASTYQA*
BS28777.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgd-PB | 481 | CG3724-PB | 1..481 | 1..481 | 2509 | 100 | Plus |
| Pgd-PA | 481 | CG3724-PA | 1..481 | 1..481 | 2509 | 100 | Plus |
