BS28779.complete Sequence
767 bp assembled on 2012-03-26
GenBank Submission: KX806544
> BS28779.complete
GAAGTTATCAGTCGACATGCGCGACCAATTCATCAGCCTGGCCCTGATTC
TGTGCGTCCTGCACAGCGCTTGCGGCTTGTACTTCCACATATCGCAGACG
GAGCGCAAGTGCTTCATCGAGGAGGTTCCCGACGAGACAACTGTGATTGT
TAACTACAAGGTAGAGCTGTATGATCCGCGCTCTAATGGATTCATGCCCT
CGTCGCCCGGAATCGGCATGCATGTGGAAGTACGCGACAGCGACGACAAG
ATTGTGCTGTCCCGCGTGTACAGCTCACAGGGCCGCATCTCGTTCACCTC
GCACACTCCTGGCGAGCACGTCATCTGCATGTTCTCGAACAGCACCGCGT
GGTTCAGTGGTGCCCAGCTGCGTGTTCACCTGGACATCCAGGTGGGAGAG
CACGCTATCGACTACGCCCATGTGGCGCAGAAGGAGAAACTGACTGAGCT
GCAGCTGCGCATCCGCCAGCTACTTGACCAGGTGGAGCAGATCACCAAGG
AGCAGAACTACCAGCGATACCGCGAGGAGCGGTTCCGTCACACCAGCGAG
AGCACCAACTCCCGCGTGCTCTGGTGGTCGCTGGCCCAGACCGTCGTCTT
GGTTTGCATGGGCTTCTGGCATCTATTTAACCTGTTCCACACTTGTGTGT
ACATTAACGAGCAGTGTTTGTGTGTGTGCTGTCTTTATATAAAGAAAATA
TCTGCCCTTGGCCTTATCAATGATAAGATTAATGGCTTGCCAGACCCGTG
AAAGCTTTCTAGACCAT
BS28779.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:18:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p24-2-RB | 735 | CG33105-PB | 1..735 | 17..751 | 3660 | 99.9 | Plus |
| p24-2-RA | 735 | CG33105-PA | 1..735 | 17..751 | 3660 | 99.9 | Plus |
| eca-RA | 651 | CG33104-PA | 1..605 | 17..621 | 2995 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Unc-115b-RE | 3535 | CG31332-RE | 77..811 | 17..751 | 3660 | 99.9 | Plus |
| p24-2-RB | 3535 | CG33105-RB | 77..811 | 17..751 | 3660 | 99.9 | Plus |
| p24-2-RA | 830 | CG33105-RA | 96..830 | 17..751 | 3660 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:18:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9691903..9692505 | 751..149 | 3015 | 100 | Minus |
| 3R | 32079331 | 3R | 9684713..9685185 | 621..149 | 2365 | 100 | Minus |
| 3R | 32079331 | 3R | 9699789..9699920 | 751..620 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 9692567..9692699 | 149..17 | 650 | 99.2 | Minus |
| 3R | 32079331 | 3R | 9685247..9685379 | 149..17 | 635 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:18:55 has no hits.
BS28779.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:15:00 Download gff for
BS28779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unc-115-RE | 77..810 | 17..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:17 Download gff for
BS28779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-115b-RE | 77..810 | 17..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:21 Download gff for
BS28779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p24-2-RA | 96..829 | 17..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:21 Download gff for
BS28779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9691904..9692504 | 150..750 | 100 | <- | Minus |
| 3R | 9692567..9692699 | 17..149 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:17 Download gff for
BS28779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5517626..5518226 | 150..750 | 100 | <- | Minus |
| arm_3R | 5518289..5518421 | 17..149 | 99 | | Minus |
BS28779.pep Sequence
Translation from 16 to 750
> BS28779.pep
MRDQFISLALILCVLHSACGLYFHISQTERKCFIEEVPDETTVIVNYKVE
LYDPRSNGFMPSSPGIGMHVEVRDSDDKIVLSRVYSSQGRISFTSHTPGE
HVICMFSNSTAWFSGAQLRVHLDIQVGEHAIDYAHVAQKEKLTELQLRIR
QLLDQVEQITKEQNYQRYREERFRHTSESTNSRVLWWSLAQTVVLVCMGF
WHLFNLFHTCVYINEQCLCVCCLYIKKISALGLINDKINGLPDP*
BS28779.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p24-2-PB | 244 | CG33105-PB | 1..244 | 1..244 | 1300 | 100 | Plus |
| p24-2-PA | 244 | CG33105-PA | 1..244 | 1..244 | 1300 | 100 | Plus |
| eca-PA | 216 | CG33104-PA | 1..206 | 1..206 | 1058 | 97.6 | Plus |
| bai-PA | 206 | CG11785-PA | 3..195 | 2..206 | 179 | 26.3 | Plus |
| CHOp24-PB | 208 | CG3564-PB | 16..198 | 10..206 | 144 | 23.4 | Plus |
