BS28780.complete Sequence
2102 bp assembled on 2012-04-25
GenBank Submission: KX801618
> BS28780.complete
GAAGTTATCAGTCGACATGATAGCTCTGAGTGCGCTGCTAACCAAATATA
CGATCGGTATTATGAGCAACCTAAGCAATGGCAACAGCAACAACAACAAC
CAGCAGCAGCAGCAACAACAACAGGGTCAGAACCCACAACAACCAGCACA
GAATGAAGGCGGAGCGGGAGCGGAGTTCGTGGCGCCACCGCCCGGACTAG
GTGCCGCAGTGGGCGTGGCAGCCATGCAGCAGCGCAACCGCCTGCTGCAG
CAGCAACAGCAGCAGCACCACCACCATCAGAATCCCGCCGCCGAGGGAAG
TGGCCTGGAGCGGGGCAGCTGCCTTCTGCGCTACGCCAGCCAGAACTCCC
TGGACGAGAGCTCCCAGAAGCACGTCCAGCGGCCAAATGGCAAGGAGCGC
GGCACTGTGGGGCAGTACAGCAATGAACAGCATACGGCGCGCTCCTTCGA
CGCCATGAACGAGATGAGAAAACAAAAACAGCTCTGTGATGTGATATTGG
TGGCCGACGATGTGGAGATCCACGCTCACCGCATGGTGCTGGCCTCCTGC
AGTCCGTACTTCTATGCGATGTTCACCAGTTTCGAGGAGTCGCGGCAGGC
GAGGATCACCCTCCAGAGTGTCGATGCTCGGGCCTTGGAGCTGCTCATCG
ACTACGTATACACTGCCACGGTGGAGGTAAACGAGGATAACGTGCAAGTC
CTCTTGACCGCCGCCAACCTGCTCCAGCTCACGGATGTGCGAGATGCCTG
CTGCGACTTCCTGCAAACTCAGTTGGATGCCAGTAATTGCCTCGGCATCC
GGGAGTTTGCCGATATTCATGCCTGCGTGGAACTTCTCAATTACGCAGAG
ACCTACATCGAGCAGCATTTCAACGAGGTGATCCAGTTCGATGAGTTTCT
GAACCTCTCGCACGAGCAGGTCATCAGCCTGATTGGCAACGACCGGATTT
CGGTTCCAAATGAGGAGCGCGTATACGAGTGCGTCATCGCCTGGCTGCGC
TACGATGTTCCTATGCGGGAACAGTTCACCTCGTTGCTCATGGAGCATGT
GCGTCTGCCGTTCCTGTCCAAGGAGTACATCACACAACGTGTGGACAAGG
AGATCCTCCTCGAGGGCAATATCGTGTGCAAGAATCTCATCATTGAGGCA
TTGACCTATCATCTACTGCCCACTGAGACAAAGTCCGCTAGAACGGTGCC
CAGGAAGCCGGTGGGCATGCCCAAGATACTGCTCGTTATTGGAGGACAAG
CACCCAAGGCTATACGATCGGTGGAGTGGTATGATCTGCGAGAGGAAAAG
TGGTACCAGGCCGCCGAAATGCCCAACCGCAGATGCCGCTCCGGCTTAAG
TGTCCTGGGTGACAAAGTCTATGCTGTCGGAGGTTTCAATGGATCACTGC
GTGTGCGCACCGTAGATGTCTACGATCCTGCCACGGATCAGTGGGCAAAC
TGCAGCAACATGGAGGCCAGACGATCTACCCTGGGAGTAGCTGTCCTCAA
TGGTTGCATATACGCCGTGGGTGGATTCGATGGCACTACGGGTCTGTCGA
GTGCCGAGATGTATGATCCCAAGACTGACATCTGGCGGTTTATCGCCTCC
ATGTCCACGCGTCGCAGTTCTGTGGGCGTAGGCGTCGTCCACGGACTTCT
TTATGCCGTGGGCGGTTACGATGGCTTCACTCGTCAGTGCTTATCTTCAG
TGGAGCGCTATAATCCGGACACGGACACATGGGTTAATGTGGCGGAAATG
AGTTCGCGGAGGAGTGGCGCCGGAGTGGGAGTGCTGAACAATATCCTTTA
TGCCGTTGGCGGTCACGATGGTCCCATGGTCAGAAGATCTGTTGAAGCCT
ACGATTGTGAAACGAACTCCTGGCGTTCAGTGGCAGACATGTCATATTGC
CGGCGAAATGCGGGAGTGGTGGCTCATGATGGCCTGCTGTATGTGGTCGG
TGGCGATGATGGCACCTCAAATCTAGCTTCTGTGGAGGTCTACTGCCCGG
ACTCGGACAGTTGGAGAATACTGCCTGCTTTGATGACCATCGGACGCAGC
TATGCGGGCGTGTGTATGATCGACAAGCCCATGTGAAAGCTTTCTAGACC
AT
BS28780.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kel-RB | 4434 | CG7210-PB | 1..2071 | 17..2087 | 10355 | 100 | Plus |
| kel-RA | 2070 | CG7210-PA | 1..2070 | 17..2086 | 10350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kel-RB | 5476 | CG7210-RB | 153..2223 | 17..2087 | 10355 | 100 | Plus |
| kel-RA | 5476 | CG7210-RA | 153..2223 | 17..2087 | 10355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:20:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18133613..18134826 | 2087..874 | 6070 | 100 | Minus |
| 2L | 23513712 | 2L | 18137477..18137931 | 471..17 | 2275 | 100 | Minus |
| 2L | 23513712 | 2L | 18135574..18135975 | 873..472 | 2010 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:20:38 has no hits.
BS28780.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:54 Download gff for
BS28780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kel-RB | 280..2348 | 17..2085 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:52 Download gff for
BS28780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kel-RA | 153..2221 | 17..2085 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:16 Download gff for
BS28780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kel-RA | 153..2221 | 17..2085 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:16 Download gff for
BS28780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18133615..18134826 | 874..2085 | 100 | <- | Minus |
| 2L | 18135574..18135975 | 472..873 | 100 | <- | Minus |
| 2L | 18137477..18137931 | 17..471 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:52 Download gff for
BS28780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18133615..18134826 | 874..2085 | 100 | <- | Minus |
| arm_2L | 18135574..18135975 | 472..873 | 100 | <- | Minus |
| arm_2L | 18137477..18137931 | 17..471 | 100 | | Minus |
BS28780.pep Sequence
Translation from 16 to 2085
> BS28780.pep
MIALSALLTKYTIGIMSNLSNGNSNNNNQQQQQQQQGQNPQQPAQNEGGA
GAEFVAPPPGLGAAVGVAAMQQRNRLLQQQQQQHHHHQNPAAEGSGLERG
SCLLRYASQNSLDESSQKHVQRPNGKERGTVGQYSNEQHTARSFDAMNEM
RKQKQLCDVILVADDVEIHAHRMVLASCSPYFYAMFTSFEESRQARITLQ
SVDARALELLIDYVYTATVEVNEDNVQVLLTAANLLQLTDVRDACCDFLQ
TQLDASNCLGIREFADIHACVELLNYAETYIEQHFNEVIQFDEFLNLSHE
QVISLIGNDRISVPNEERVYECVIAWLRYDVPMREQFTSLLMEHVRLPFL
SKEYITQRVDKEILLEGNIVCKNLIIEALTYHLLPTETKSARTVPRKPVG
MPKILLVIGGQAPKAIRSVEWYDLREEKWYQAAEMPNRRCRSGLSVLGDK
VYAVGGFNGSLRVRTVDVYDPATDQWANCSNMEARRSTLGVAVLNGCIYA
VGGFDGTTGLSSAEMYDPKTDIWRFIASMSTRRSSVGVGVVHGLLYAVGG
YDGFTRQCLSSVERYNPDTDTWVNVAEMSSRRSGAGVGVLNNILYAVGGH
DGPMVRRSVEAYDCETNSWRSVADMSYCRRNAGVVAHDGLLYVVGGDDGT
SNLASVEVYCPDSDSWRILPALMTIGRSYAGVCMIDKPM*
BS28780.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kel-PB | 1477 | CG7210-PB | 1..689 | 1..689 | 3598 | 100 | Plus |
| kel-PA | 689 | CG7210-PA | 1..689 | 1..689 | 3598 | 100 | Plus |
| dbo-PB | 620 | CG6224-PB | 49..606 | 134..688 | 1180 | 43.2 | Plus |
| dbo-PA | 623 | CG6224-PA | 49..606 | 134..688 | 1180 | 43.2 | Plus |
| CG15097-PC | 617 | CG15097-PC | 24..603 | 108..686 | 1115 | 41.8 | Plus |
