BS28783.complete Sequence
1931 bp assembled on 2012-04-06
GenBank Submission: KX802266
> BS28783.complete
GAAGTTATCAGTCGACATGATGCAAATCAAGCGCCTCCTGTGCAAATCCT
GCGGCCTGGGCACCCTTCTGGTGGCGGTCGTCTGGCTGCTGGCGCTGCTT
TTCTACTCGCACAGCCTGCGCAGCTCCATCCGCTCGGCAGGATGGAGGAT
CGACGAAGGGAACGCAACGCCACGGGCCGAGCTGAGCTACCAGGCCAGGG
TCACCGTCGGATGCACTCCAAATGCCAGCATTACCACTGGCGAATCGCCG
GCGGCACCCAAGCCGCCCAGTGATCCGGAGCAATTGGAACTGTTGGGTGT
GGTGCGCAACAAGCAGGACAAGTACATACGCGACATTGGCTACAAGCATC
ACGCCTTCAACGCGCTGGTGTCCAATAACATAGGACTCTTCCGGGCGATC
CCAGACACTCGGCACAAGGTGTGCGATCGCCAGGAGACCACGGAAGCGGA
AAATCTGCCCCAGGCCTCCATAGTCATGTGCTTCTACAACGAGCACAAGA
TGACGCTGATGCGCTCGATTAAGACCGTGCTGGAACGCACGCCCAGCTAC
CTGCTGCGCGAGATTATTCTGGTGGATGATCACAGCGATCTTCCAGAATT
GGAATTCCATTTGCACGGGGATCTGCGTGCCCGCCTGAAGTACGACAACC
TGCGGTACATCAAAAACGAGCAGCGCGAGGGTCTCATTCGTTCCCGGGTC
ATTGGTGCACGCGAGGCCGTGGGCGATGTGCTCGTCTTCCTCGACTCGCA
TATCGAGGTCAATCAGCAGTGGCTGGAGCCGCTGCTGCGCCTCATCAAGT
CGGAGAACGCCACTCTGGCCGTGCCCGTCATCGACCTGATCAACGCTGAT
ACCTTTGAGTACACGCCCAGTCCACTGGTGCGCGGAGGATTCAACTGGGG
CCTGCACTTCCGCTGGGAGAATCTGCCCGAGGGCACGCTCAAGGTGCCGG
AGGATTTTCGCGGACCCTTCCGTTCGCCCACCATGGCCGGCGGATTGTTT
GCCGTGAACAGGAAGTACTTCCAGCATCTGGGCGAGTACGACATGGCCAT
GGATATATGGGGTGGCGAGAATATAGAGATCTCCTTCAGAGCCTGGCAAT
GCGGTGGCGCCATTAAGATCGTTCCCTGCTCCCGTGTCGGTCACATATTC
CGCAAACGACGTCCGTACACTTCGCCAGATGGAGCCAACACCATGTTGAA
GAACTCACTGCGTTTGGCGCACGTCTGGATGGATCAGTACAAGGATTACT
ATCTCAAGCACGAAAAGGTGCCCAAGACCTATGATTATGGAGACATTAGC
GATCGCCTCAAGCTTAGGGAGCGTCTGCAGTGCAGGGACTTTGCCTGGTA
TCTAAAGAATGTCTATCCAGAGCTGCATGTGCCGGGCGAGGAGTCCAAGA
AGTCGGCGGCAGCGCCCATCTTTCAGCCTTGGCACTCGCGAAAACGTAAC
TATGTCGACACATTCCAGCTGCGACTGACGGGAACGGAGCTCTGTGCCGC
CGTGGTGGCTCCCAAGGTGAAGGGTTTCTGGAAGAAGGGCAGCTCCCTGC
AATTGCAAACCTGCCGAAGGACACCCAATCAACTGTGGTACGAAACGGAG
AAGGCGGAAATTGTGCTGGACAAGTTGCTGTGCCTGGAGGCATCCGGGGA
TGCGCAGGTCACGGTCAACAAGTGCCACGAGATGCTCGGCGATCAGCAGT
GGCGGCACACCCGCAACGCCAACAGTCCCGTCTACAACATGGCCAAAGGC
ACCTGCCTCCGGGCAGCTGCTCCCACGACGGGCGCCCTCATCAGTCTGGA
TCTGTGCTCCAAGTCCAACGGAGCGGGCGGCTCCTGGGACATTGTGCAGC
TGAAGAAGCCAACGGAGGCGGAGGGCAGGGCCAAGGAGGCGAGGAACTCG
GACAAGGCGCTGTGAAAGCTTTCTAGACCAT
BS28783.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:27:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgant35A-RA | 1899 | CG7480-PA | 1..1899 | 17..1915 | 9495 | 100 | Plus |
| pgant2-RB | 1902 | CG3254-PB | 1146..1301 | 1015..1170 | 225 | 76.3 | Plus |
| pgant2-RA | 1902 | CG3254-PA | 1146..1301 | 1015..1170 | 225 | 76.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgant35A-RA | 2160 | CG7480-RA | 128..2027 | 16..1915 | 9500 | 100 | Plus |
| pgant2-RB | 3377 | CG3254-RB | 1504..1659 | 1015..1170 | 225 | 76.3 | Plus |
| pgant2-RA | 3341 | CG3254-RA | 1468..1623 | 1015..1170 | 225 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14359379..14361278 | 16..1915 | 9500 | 100 | Plus |
| 2L | 23513712 | 2L | 3406586..3406741 | 1170..1015 | 225 | 76.3 | Minus |
Blast to na_te.dros performed 2014-11-28 04:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gtwin | 7411 | gtwin GTWIN 7411bp | 6682..6722 | 624..664 | 115 | 75.6 | Plus |
BS28783.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 13:47:04 Download gff for
BS28783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgant35A-RA | 163..2060 | 17..1914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:17 Download gff for
BS28783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgant35A-RA | 129..2026 | 17..1914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:20 Download gff for
BS28783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgant35A-RA | 129..2026 | 17..1914 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:20 Download gff for
BS28783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14359380..14361277 | 17..1914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:17 Download gff for
BS28783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14359380..14361277 | 17..1914 | 100 | | Plus |
BS28783.pep Sequence
Translation from 16 to 1914
> BS28783.pep
MMQIKRLLCKSCGLGTLLVAVVWLLALLFYSHSLRSSIRSAGWRIDEGNA
TPRAELSYQARVTVGCTPNASITTGESPAAPKPPSDPEQLELLGVVRNKQ
DKYIRDIGYKHHAFNALVSNNIGLFRAIPDTRHKVCDRQETTEAENLPQA
SIVMCFYNEHKMTLMRSIKTVLERTPSYLLREIILVDDHSDLPELEFHLH
GDLRARLKYDNLRYIKNEQREGLIRSRVIGAREAVGDVLVFLDSHIEVNQ
QWLEPLLRLIKSENATLAVPVIDLINADTFEYTPSPLVRGGFNWGLHFRW
ENLPEGTLKVPEDFRGPFRSPTMAGGLFAVNRKYFQHLGEYDMAMDIWGG
ENIEISFRAWQCGGAIKIVPCSRVGHIFRKRRPYTSPDGANTMLKNSLRL
AHVWMDQYKDYYLKHEKVPKTYDYGDISDRLKLRERLQCRDFAWYLKNVY
PELHVPGEESKKSAAAPIFQPWHSRKRNYVDTFQLRLTGTELCAAVVAPK
VKGFWKKGSSLQLQTCRRTPNQLWYETEKAEIVLDKLLCLEASGDAQVTV
NKCHEMLGDQQWRHTRNANSPVYNMAKGTCLRAAAPTTGALISLDLCSKS
NGAGGSWDIVQLKKPTEAEGRAKEARNSDKAL*
BS28783.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgant35A-PA | 632 | CG7480-PA | 1..632 | 1..632 | 3360 | 100 | Plus |
| pgant2-PB | 633 | CG3254-PB | 156..627 | 94..562 | 953 | 42.3 | Plus |
| pgant2-PA | 633 | CG3254-PA | 156..627 | 94..562 | 953 | 42.3 | Plus |
| CG30463-PD | 650 | CG30463-PD | 168..617 | 106..581 | 911 | 41.2 | Plus |
| CG30463-PA | 650 | CG30463-PA | 168..617 | 106..581 | 911 | 41.2 | Plus |
