Clone BS28784 Report

Search the DGRC for BS28784

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:287
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG7798-RA
Protein status:BS28784.pep: full length peptide match
Sequenced Size:479

Clone Sequence Records

BS28784.complete Sequence

479 bp assembled on 2012-03-26

GenBank Submission: KX803174

> BS28784.complete
GAAGTTATCAGTCGACATGTGGCCCATTTGGCTGCTGGTGCTCTTAACGC
TATCACTGGCCACTGGCCGCCAGGTGGGCAGATGCAGTTTGGCCCGGCAG
CTGTATCGATACGGAATGGCTTACAACGAGCTACCCGATTGGCTGTGCCT
CGTGGAGGGCGAGAGCTCGTTCAACACAAAAGCCATCAATCCCTCGAACG
TTGATGGATCCGTGGACTGGGGTCTCTTCCAGATCAACGATCGTTACTGG
TGCAAGCCGGCGGATGGTCGTCCATCCAACGATCTGTGTCGCTTGCCCTG
CCGCCTGCTGTTGAGCGACGATATCCGGTATTCCATTGCCTGTGCGAAGT
ACATCAGGAAACAGCAAGGATTCTCCGCCTGGGTGGCTTGGAACAATCGA
TGTCAGGGTGTCAAGCCCAATGTGAATCACTGCTTCCGGCGGCGACACAG
AAATTCGGGTTGAAAGCTTTCTAGACCAT

BS28784.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7798-RA 447 CG7798-PA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7798-RA 516 CG7798-RA 1..447 17..463 2235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16222181..16222627 463..17 2235 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:18:43 has no hits.

BS28784.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:14:58 Download gff for BS28784.complete
Subject Subject Range Query Range Percent Splice Strand
CG7798-RA 1..446 17..462 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:10 Download gff for BS28784.complete
Subject Subject Range Query Range Percent Splice Strand
CG7798-RA 1..446 17..462 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:16 Download gff for BS28784.complete
Subject Subject Range Query Range Percent Splice Strand
CG7798-RA 1..446 17..462 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:16 Download gff for BS28784.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16222182..16222627 17..462 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:10 Download gff for BS28784.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12109687..12110132 17..462 100   Minus

BS28784.pep Sequence

Translation from 16 to 462

> BS28784.pep
MWPIWLLVLLTLSLATGRQVGRCSLARQLYRYGMAYNELPDWLCLVEGES
SFNTKAINPSNVDGSVDWGLFQINDRYWCKPADGRPSNDLCRLPCRLLLS
DDIRYSIACAKYIRKQQGFSAWVAWNNRCQGVKPNVNHCFRRRHRNSG*

BS28784.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7798-PA 148 CG7798-PA 1..148 1..148 828 100 Plus
LysP-PA 141 CG9116-PA 12..141 10..140 349 47.3 Plus
LysB-PB 140 CG1179-PB 5..140 7..140 337 46 Plus
LysB-PA 140 CG1179-PA 5..140 7..140 337 46 Plus
LysD-PA 140 CG9118-PA 5..140 4..140 334 45.3 Plus