Clone BS28785 Report

Search the DGRC for BS28785

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:287
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG13862-RA
Protein status:BS28785.pep: gold
Sequenced Size:401

Clone Sequence Records

BS28785.complete Sequence

401 bp assembled on 2012-05-15

GenBank Submission: KX806227

> BS28785.complete
GAAGTTATCAGTCGACATGAAGACGATTTCGCTGCTAACTTTTGTGGTGA
TGATGCTCGGAGTGGCACTGAGCTTGGTTTGGGCCGGCCCCGATGATGGC
TACCTTTATGACCAGCCATCGGGTGAGCAACTTCAGGAACTCCAGGTGAT
CTCTCCCCCCAGGAAGCTCCGGCTAAAGCCACGTGTCTACCCAGGGCATC
CCTCTCAGGCTTGCGGAAACGTGGAGGCGACGGATCATGCCGCTGCCCTG
ACCACCTACCATGCCAACCGCCCCCAGCCGCGTCGCATTTACAATCACCA
GGAAGTCGAGGTGGACAGCTCGTTCTTTGAGCCCACGCCGGATCGGATCG
AGGAACTCAAGCGTATTCTCTTGGATCAGCAATGAAAGCTTTCTAGACCA
T

BS28785.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13862-RA 336 CG13862-PA 1..336 50..385 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13862-RA 490 CG13862-RA 59..430 16..387 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22332158..22332499 46..387 1710 100 Plus
Blast to na_te.dros performed on 2014-11-28 11:21:06 has no hits.

BS28785.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 14:08:16 Download gff for BS28785.complete
Subject Subject Range Query Range Percent Splice Strand
CG13862-RA 60..427 17..384 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:33 Download gff for BS28785.complete
Subject Subject Range Query Range Percent Splice Strand
CG13862-RA 60..427 17..384 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:41:06 Download gff for BS28785.complete
Subject Subject Range Query Range Percent Splice Strand
CG13862-RA 60..427 17..384 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:41:06 Download gff for BS28785.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22332159..22332496 47..384 100   Plus
3R 22332050..22332079 17..46 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:33 Download gff for BS28785.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18157772..18157801 17..46 100 -> Plus
arm_3R 18157881..18158218 47..384 100   Plus

BS28785.pep Sequence

Translation from 16 to 384

> BS28785.pep
MKTISLLTFVVMMLGVALSLVWAGPDDGYLYDQPSGEQLQELQVISPPRK
LRLKPRVYPGHPSQACGNVEATDHAAALTTYHANRPQPRRIYNHQEVEVD
SSFFEPTPDRIEELKRILLDQQ*

BS28785.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13862-PA 111 CG13862-PA 1..111 12..122 590 100 Plus