BS28786.complete Sequence
770 bp assembled on 2012-03-26
GenBank Submission: KX804375
> BS28786.complete
GAAGTTATCAGTCGACATGAACACAGCAAGATGGATAGTACTGTGTATCG
TTTTGATGTTTTACCAGGGATCTGCCCAGACTCTGGAGGAGGATTGCGTA
GACCACATGGAGCGGATTAATGGATCAAGCTATGCTCCCTGGCTGGCTGA
AATTCTATCGGATTCTAAAGTAATTTGCGCTGGAGCACTCATAAATAATC
TTTATGTTCTAACAGCTGCGAGTTGTTTTAAAGAGAATGAAAAACTAACT
GTTCGCTTGGGCAGTGGCTATTTTGATAAAAGCTACGAAAATTTCCGAGT
AACAAAGGCTTACTTTTGGATGACACATTTCCCGGCCAACAATACGAATA
ATTTGTGTATCTTTCGGTTGCAAACGGAAGTGGAATTTAAGACCCACATT
CGACCGATGTGTATCACAAAAAGTCCTAAAAGCCTTGGATTGGCGACCAC
TTTTGAAATTATCAATGAAAAGCCCAAAATGTGGTACTTTTGTAAAAACA
TAAAAGGTTTATTCTGTAAATATGTTTTCGGAGAAAATGAAGAAAAATGG
CAGTCCAAACCCACTGGAAGTCCTTGGACTGAAACAATCTCAAACGGTCC
TTTCAAGGGACTTGTACGATATGGAATCCTGAGCTATCGTGATAACAAAA
CCTATGATGAGGTTTATATAAATGTTATGTCTCATATTAACTGGATAGCT
CAAATCTCGTTAGAGATTGATATAAGTACTCCAGTCAAGAAAAAAGAATA
TTAAAAGCTTTCTAGACCAT
BS28786.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:19:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43124-RA | 738 | CG43124-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:19:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43124-RA | 784 | CG43124-RA | 30..768 | 17..755 | 3695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:19:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28263887..28264395 | 755..247 | 2545 | 100 | Minus |
| 3R | 32079331 | 3R | 28264557..28264744 | 204..17 | 925 | 99.5 | Minus |
| 3R | 32079331 | 3R | 28264455..28264500 | 246..201 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:19:06 has no hits.
BS28786.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:15:02 Download gff for
BS28786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43124-RA | 30..749 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:23 Download gff for
BS28786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43124-RA | 30..749 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:25:26 Download gff for
BS28786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43124-RA | 30..749 | 17..736 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:25:26 Download gff for
BS28786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28263906..28264395 | 247..736 | 100 | <- | Minus |
| 3R | 28264455..28264500 | 201..246 | 100 | <- | Minus |
| 3R | 28264561..28264744 | 17..200 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:23 Download gff for
BS28786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24089628..24090117 | 247..736 | 100 | <- | Minus |
| arm_3R | 24090177..24090222 | 201..246 | 100 | <- | Minus |
| arm_3R | 24090283..24090466 | 17..200 | 100 | | Minus |
BS28786.pep Sequence
Translation from 16 to 753
> BS28786.pep
MNTARWIVLCIVLMFYQGSAQTLEEDCVDHMERINGSSYAPWLAEILSDS
KVICAGALINNLYVLTAASCFKENEKLTVRLGSGYFDKSYENFRVTKAYF
WMTHFPANNTNNLCIFRLQTEVEFKTHIRPMCITKSPKSLGLATTFEIIN
EKPKMWYFCKNIKGLFCKYVFGENEEKWQSKPTGSPWTETISNGPFKGLV
RYGILSYRDNKTYDEVYINVMSHINWIAQISLEIDISTPVKKKEY*
BS28786.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43124-PA | 245 | CG43124-PA | 1..245 | 1..245 | 1324 | 100 | Plus |
| CG43125-PA | 258 | CG43125-PA | 1..249 | 1..237 | 298 | 33.1 | Plus |
| CG34436-PA | 270 | CG34436-PA | 1..260 | 1..236 | 210 | 27 | Plus |
| CG30286-PB | 277 | CG30286-PB | 3..268 | 6..227 | 196 | 27.3 | Plus |
| CG33465-PC | 488 | CG33465-PC | 10..261 | 11..227 | 194 | 28.6 | Plus |
